Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1769 ATGAAGTTCTGCAAAAAGTATCAGGAATACATGCAAGGCCAGGAGAAGAAACTTCCATGTGTAGGATTCAAGAAGCTCAAGAAGATTCTGAAGAAGTGCAGGAGAAACTCTTCATCCCTGAAACCCCTTAATGCATCCCTTGCCGCCAAAACCTGCCCCGACCATTGCCCAGTGTGCGATGGGACCTTCTTCCCTTCCCTTCTCAATGAAATGTCAGATATAGTGGGGTGCTTTAATCAGCGGGCGCAGAAATTGTTGGAGCTACATCTCGCTTCTGGGGTCAGAAAGTACTTCTTCTGGATCAAAGGCAAATTACAAGGGAACCATACTGCACTGATTCAAGAGGGCAAAGATCTTGTTACTTATGCACTCATAAATGCCATTGCAATTCGAAAAATACTAAAGAAATATGATAAGATTCATTATTCCAAGCAAGGGCAATTGTTCAAGTCACAAGTCCAGAGTATGCACAAGGAGATTCTTCAAAGTCCCTGGCTTTGTGAGCTTATGGCCTTCCACATCAATTTAAGGGAAACTAAGGTCAAGTCAAGGAAGGCACATGCTTTGTTCGATGGATGTTCTCTCACATTCAAGGATGGGAAACCGTCACTTACTTGTGAGCTCTTTGATTCTATCAAAGTTGACATTGACTTGACTTGTTCTATATGCTTGGACACAGTGTTTGATCCAGTTTCTCTGACTTGTGGCCATATATTCTGCTATATTTGTGCATGCTCGGCTGCATCGGTATCTATTGTCAATGGACTTAAGTCTGCAGATCCTAAAATGAAATGTCCTCTATGTCGTGAGGGTGCAGTTTATGAAGGTGCTGTGCGCTTGGAAGAACTAAATATTCTGTTAAGCCGAAGTTGTCAGGAATACTGGGAGCAGAGGCTTCAGACAGAGAGGGTGGAGAGGGTTAAGCAAATAAAGGAACACTGGGATTCACAGTGTAGGGCATTCGTGGGCGTCTAA 975 0.4349 MKFCKKYQEYMQGQEKKLPCVGFKKLKKILKKCRRNSSSLKPLNASLAAKTCPDHCPVCDGTFFPSLLNEMSDIVGCFNQRAQKLLELHLASGVRKYFFWIKGKLQGNHTALIQEGKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQSMHKEILQSPWLCELMAFHINLRETKVKSRKAHALFDGCSLTFKDGKPSLTCELFDSIKVDIDLTCSICLDTVFDPVSLTCGHIFCYICACSAASVSIVNGLKSADPKMKCPLCREGAVYEGAVRLEELNILLSRSCQEYWEQRLQTERVERVKQIKEHWDSQCRAFVGV* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1769 324 SMART ring_2 220 268 IPR001841 -
Gso19g1769 324 CDD SPX_BAH1-like 2 147 - -
Gso19g1769 324 Pfam Zinc finger, C3HC4 type (RING finger) 217 270 - -
Gso19g1769 324 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Gso19g1769 324 ProSiteProfiles Zinc finger RING-type profile. 220 269 IPR001841 -
Gso19g1769 324 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Gso19g1769 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 324 - -
Gso19g1769 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 322 IPR013083 -
Gso19g1769 324 SUPERFAMILY RING/U-box 213 272 - -
Gso19g1769 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 324 IPR033326 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1769 Gso-Chr19 46503733 46506875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1769 217 269 C3H Transcription Factor Family AT4G28270 39.655 6.03e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1769 K16275 - gmx:100797432 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1769 19 46503733 46506875 Gso3g1803 3 43733601 43737616 GST
Gso10g0166 10 1714669 1718423 Gso19g1769 19 46503733 46506875 PCT