Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1753 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTCTCCTCAGGAAATAATGGAGAAGAAGTTCATCAAGAAAGCCAGCAGCAACATCTACAAAGCCAACTTCATGACTCAAGTTCAGGACCATCCGGTGCTTGCAATAGCAATGCCTCCTCTAATCAACAACAAACCAAGAAGAAACGAAATCTTCCTGGAACCCCAGATCCTAATGCTGAAGTTGTTGCTTTATCACCAACCACACTAATGGCAACAAATAGATTCGTGTGTGAGATCTGCAACAAAGGGTTCCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCATGGAAACTGAGACAAAGAACAAGCACTGAGGTGAAGAAGCGGGTCTATGTGTGCCCTGAGCCATCATGCGTCCACCATAACCCAGCTCGTGCATTAGGGGACCTCACTGGCATAAAAAAACATTATAGCCGCAAACACGGTGAGAAGAAATGGAAATGTGACAAGTGCTCCAAAAGATACGCAGTGCAATCTGATTGGAAGGCTCACCAGAAAACTTGTGGCACTAGGGAATACAAATGTGATTGTGGTACCATATTTTCCAGGAGAGATAGTTTCATCACCCACAGAGCTTTCTGTGACGCATTAACTGAAGAAAACAACCGAGTGAACAACCAGGGATTAACAAGTGGCATGCCACCAAACTTACAAAGTCAAATACCCGATCTCATGTCTACCATGCCCCTAACCACTAGTCCCAACACAGCATCCAAATTCGGGGAATATGACCCTAAGAACCCTCTAAAATCACTAGCCCAAGAACTTGTCCCAATACCATTCAAGTTCATGAGCATGGGTGGGGGTATGTTCTCCACCAATGCAGGTGCACTCTTTGGTGGCCCAAAAACCATGTCTCCCTCTTCTTCCAGCCTCCAGCTAGGCTCCAGCACCTCATCAAGCTTCAATTACTTGCAAGACAGCGAAAACGGAGGACTAATCGCGGCCTCGGCTCAAATGTCCGCAACAGCATTACTACAGAAAGCAGCACAAATGGGTGCCACTGCAAGCAATAGCATTAACTCCCCAATGATGCAAAAAGGCTTTGTTAGTGGTACTACTACTGGTCCTGATCATGTTTCTTCCACTACTAGGCCACCATATTCTGGTGCTATGCTTCAGCACAACAACTCCTATGACCACTTCTCTCCACAGCCTGATCTTTCCAGCATGGCTGAGGTGAGTGGTGGAGGAGCATTCATCAATCAGTTGTTTCATAAAGGACAAGAGATTTCGCAAGTTTTCGATACTAACAATCCCGGTTCTGCCATGAATGATGTGGGAATGTTCGGCCAAATGCCAATGGGGAGAGATCATCACAACCAAGGGTTGATGAAGAGCGTGGAACAAGAAGTTAGTAATAGTTCCAGTTTGATGCATGGAAGAGATGTGAATGATGGTAACCACCCAATGCAGCCATCAACAAGGTTTGGAGGGAGTGACATGACAACTGTTCATGACTTTTTGGGCATTGGTGGTTCAACTTCAAGAGTTATGAATCATTTTCATCACCATTTTCCACACGAGGATTCAACTATAGAGGAACCCATGTGGGATGTTTGA 1608 0.454 MSNISGDEGSFSSGNNGEEVHQESQQQHLQSQLHDSSSGPSGACNSNASSNQQQTKKKRNLPGTPDPNAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNNQGLTSGMPPNLQSQIPDLMSTMPLTTSPNTASKFGEYDPKNPLKSLAQELVPIPFKFMSMGGGMFSTNAGALFGGPKTMSPSSSSLQLGSSTSSSFNYLQDSENGGLIAASAQMSATALLQKAAQMGATASNSINSPMMQKGFVSGTTTGPDHVSSTTRPPYSGAMLQHNNSYDHFSPQPDLSSMAEVSGGGAFINQLFHKGQEISQVFDTNNPGSAMNDVGMFGQMPMGRDHHNQGLMKSVEQEVSNSSSLMHGRDVNDGNHPMQPSTRFGGSDMTTVHDFLGIGGSTSRVMNHFHHHFPHEDSTIEEPMWDV* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1753 535 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Gso19g1753 535 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 519 - -
Gso19g1753 535 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 519 - -
Gso19g1753 535 SUPERFAMILY beta-beta-alpha zinc fingers 84 182 IPR036236 -
Gso19g1753 535 MobiDBLite consensus disorder prediction 366 388 - -
Gso19g1753 535 Gene3D Classic Zinc Finger 139 219 - -
Gso19g1753 535 Pfam Zinc finger, C2H2 type 85 107 IPR013087 -
Gso19g1753 535 MobiDBLite consensus disorder prediction 1 70 - -
Gso19g1753 535 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Gso19g1753 535 Gene3D Classic Zinc Finger 63 131 - -
Gso19g1753 535 SMART c2h2final6 161 181 IPR013087 -
Gso19g1753 535 SMART c2h2final6 85 107 IPR013087 -
Gso19g1753 535 SMART c2h2final6 126 156 IPR013087 -
Gso19g1753 535 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1753 Gso-Chr19 46382454 46385481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1753 35 375 IDZ Gene Family AT3G50700 53.369 1.75e-115 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso19g1753 zf-C2H2 0.0055 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1753 - - gmx:100782774 1070.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1753 19 46382454 46385481 Gso3g1785 3 43624126 43627302 GST