Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1752 ATGGATGCGTGGAACGAAGATTTTTCGGTGCTGGAGATTGGGAGCTCCGCGGAATCGTTCCAGAAGTTTTTGGTTTCGCAGAAAGAGCTCTTCCACAGCCAGATCGATCAGTTTCAGGAAATCGTCGTCACACAATGCAAACTCACCGGCGTCAATCCTCTCTCTCAGGAAATGGCTGCTGGTGCTTTGTCAATAAAAATTGGAAAAAGACCGAGGGATTTATTGAATCCAAAGGCTGTAAATTACATGCAATCAGTTTTTTCCATTAAAGATGCTATTAGCAAGAAAGAATTGCACGAGATCAGTGCTTTACTTGGTGTCACAGTGACACAGGTGCGTGACTTTTTCAATGCTCAACGTTCAAGAGTGAGGAGATCCGTGCAGTTGTCAAGGGAGAGGGTATTGAGTTCTAATTCTTGTGAAGAACCTCATGATGATCAAATAAACTCTGATCCTATGAGACCAATAAATCCAACTCCCTTAAACTCTGCTGGCCAGTCCAATACTGAAGAAGCTTCTTGTTCGACACAGGAAGTGGCTTTGCCCGACCTAGATGACTCAGATAAACAATTTGTTGATAACATTTTTAGTTTAATACAAAAAGAGGAGACATTTTCTGGGCAGGAGAAATTGATGGAGTGGATATTGACAATACAGAATTTTTCAGTATTGTTGTGGTTTTTGAGCAGAGGGGGTGGAATGAATTTAGCAACTTGGTTGAGTAAGGCAGCTGCTGAAGAGCAAACAAGTGTCCTTCTTCTTATCTTGAAGGTTCTTTGTCATTTGCCTTTACATAAAGCCATTCCCATGCACATATCAGCTATATTGCAGAGTGTAAATAAACTACGGTTCTACAGGACATCAGACATATCAAATAGGGCAAGGGTTTTGCTGTCAAAGTGGAGCAAACTATTTGCAAGGAACCAAGTAATAAAGAAGCCCAATGGTGTTAAGATTTCTATTGATGGTCATAAAGAGATGATGCTTTCTCAGAGTATTGGTCAATTCATGGGCTCTGAATCATGGCATTCAAATATTGATGTTCCTGAAGACATTCTTGCTCTCTCAAGCGAATGTTCGGATAATTTCAGGAAAATGGGATCTCCACAAGGTGTGAAATTGTTGCCTCCCAGCTTGGATGATTCTAATAAAAAGTCCTCTCTTGGTGTATCTTCATCTCAATCTAGAGAACGCAGAAAAGTGCAACTGGTGGAACAGCCGGGTCAAAAGTCAGTGAGCAGAAGCTCACAAGTGACGAGAGCAGGGCCTGTAAGTCAAGGCCGTCCCATGTCTGTTGATGATATCCAGAAAGCAAAAATGCGTGCTTTATTTATGCAGAGTAAGTATGGGAAATCTGGTTCAAAAGAGAGTAAAGAAACAAAGATTGATAGTCCAAATAAACAACCTCAGACAAACCCTGCCAGTATTGCAGCTTGCTCTTCTAAAGTTCCTACTCCACCCAAAATTGAAGAAAACAAGAAACCTTTGTTACTTACCTCTAAAACCACTAATAGGCTGGAAGCTTCTTATTCAAAACCAAAAATGGATGTGAAGGAACCTCTCTGGGAGAAGTGCAAGAGGGTTCAGATCCCATGGAGAACACCAGCAGAAGTGGAACTTAAAGACACCTGGAGAGTTGGTGGCGGCGAAAATAGCAAAGAGGTTGAGGTCCAGAGAAATAGAAACCGCAGGGACAAGGAAATTATATACAAGACTGTCCAAGAGATGCCACCTAACCCCAAGGAGCCTTGGGACCTTGAAATGGACTATGATGACACTTTGACGTTGGAAATTCCTATTGAACAGCTACCAGATGGTGATGGTGCAGATATAGCAATTTCTCCCAATCAGGTTGGAACTCATACTGTTCAAGGGGTGGCCTCCACTTCTTCAACCGGTGTGGCTACTGCTGAGCCTGATTTAGAATTGCTTGCTGTACTGCTAAAAAATCCGGAGTTGGTATTTGCCTTAACTTCTGGACAAGGTGGTAGCATACCGAACCAAGAAACTGTGAAGCTGCTTGACATGATCAAGAGTGGAGGTGTGAACTTGGGTTTAAGTGAAAATACAAATGGAAGTTATGGCACGAGTGTGAAGTCCCCGGAGAAGGTGGAAGTTTCTCTCCCATCCCCAACCCCCTTGAGCGATCCAAGAACGAGTGGATGGAGCTCAGAAGCATCAAAAAATCCCTTTTCACGGCGAAGTCTAGCACCCGATAGAATTACACAGAACCATGCTGCAGTGGCAACTACCAACTTATTATCTCAGATTCCTATAACTGGCACTACAGTAAGGCAACAGCCAACAGTTGTGGTTCCATCTTCGAGGCATCTTACAAGCACATCAGTTTCTCCATATTCTCTGCCTCATGCAACTAATGTTATTCCTGAAAAGCCATCACCACTGGGGCAAGTACAAACATCCTCAGATGTAGGTTTAACCATGAAGAACTTAACCACCGCAAATGCATCTTCAGTTAACTTTCCTGGCACACATTCAACTCTAGCATTGCGGGGTGATGGCACCAATTACGTAAAACCTGTACCTAATTTGAGTGTACAACATGAGGGTTTGTCTAATTCATTCCGACAACCCTTCATGCCACCCTCACCAACGCCATCACATTCATCCTTACAGCAACAAAGACATCAACATTTGACTCAGGAAGTCCATTACACTGAACCTCCATATCGTAACCCTGGCCGATCCTACCCGCCACAAATCGAAAAATCAGATCATGGGTCTGATAATATGTGGAGAGTTAGGCAGGATCATGTGTCATCCAGTTATCATTCTCAGCGAAATCATAACAACAACTATAACACAATGGTTGGGGGATCCAGGCAATCTGGTTTTTGGGATAGAAATAATCATGCAAGGGGAGAATTTGAATCATGGAGTCCGGAGAATAGTCCAACTAGAAATCCTAGGTATGCACCAGGTAGAAATTACCCAGAGTCCAGAATGAATCATGGTAGAAATCCTAGACCTGAATGGTCAAGGCAGAGGGGTTCTTCTGGACACTGGGACCCGGGCAGGCAGGGAAATAGAAAGTGGCATGATCAGAGACGATGA 3075 0.4322 MDAWNEDFSVLEIGSSAESFQKFLVSQKELFHSQIDQFQEIVVTQCKLTGVNPLSQEMAAGALSIKIGKRPRDLLNPKAVNYMQSVFSIKDAISKKELHEISALLGVTVTQVRDFFNAQRSRVRRSVQLSRERVLSSNSCEEPHDDQINSDPMRPINPTPLNSAGQSNTEEASCSTQEVALPDLDDSDKQFVDNIFSLIQKEETFSGQEKLMEWILTIQNFSVLLWFLSRGGGMNLATWLSKAAAEEQTSVLLLILKVLCHLPLHKAIPMHISAILQSVNKLRFYRTSDISNRARVLLSKWSKLFARNQVIKKPNGVKISIDGHKEMMLSQSIGQFMGSESWHSNIDVPEDILALSSECSDNFRKMGSPQGVKLLPPSLDDSNKKSSLGVSSSQSRERRKVQLVEQPGQKSVSRSSQVTRAGPVSQGRPMSVDDIQKAKMRALFMQSKYGKSGSKESKETKIDSPNKQPQTNPASIAACSSKVPTPPKIEENKKPLLLTSKTTNRLEASYSKPKMDVKEPLWEKCKRVQIPWRTPAEVELKDTWRVGGGENSKEVEVQRNRNRRDKEIIYKTVQEMPPNPKEPWDLEMDYDDTLTLEIPIEQLPDGDGADIAISPNQVGTHTVQGVASTSSTGVATAEPDLELLAVLLKNPELVFALTSGQGGSIPNQETVKLLDMIKSGGVNLGLSENTNGSYGTSVKSPEKVEVSLPSPTPLSDPRTSGWSSEASKNPFSRRSLAPDRITQNHAAVATTNLLSQIPITGTTVRQQPTVVVPSSRHLTSTSVSPYSLPHATNVIPEKPSPLGQVQTSSDVGLTMKNLTTANASSVNFPGTHSTLALRGDGTNYVKPVPNLSVQHEGLSNSFRQPFMPPSPTPSHSSLQQQRHQHLTQEVHYTEPPYRNPGRSYPPQIEKSDHGSDNMWRVRQDHVSSSYHSQRNHNNNYNTMVGGSRQSGFWDRNNHARGEFESWSPENSPTRNPRYAPGRNYPESRMNHGRNPRPEWSRQRGSSGHWDPGRQGNRKWHDQRR* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1752 1024 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 234 316 IPR035441 -
Gso19g1752 1024 MobiDBLite consensus disorder prediction 464 479 - -
Gso19g1752 1024 ProSiteProfiles 'Homeobox' domain profile. 66 126 IPR001356 GO:0003677
Gso19g1752 1024 SUPERFAMILY Homeodomain-like 68 132 IPR009057 -
Gso19g1752 1024 MobiDBLite consensus disorder prediction 921 954 - -
Gso19g1752 1024 MobiDBLite consensus disorder prediction 380 397 - -
Gso19g1752 1024 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 231 309 IPR035441 -
Gso19g1752 1024 MobiDBLite consensus disorder prediction 860 1024 - -
Gso19g1752 1024 MobiDBLite consensus disorder prediction 367 431 - -
Gso19g1752 1024 MobiDBLite consensus disorder prediction 152 176 - -
Gso19g1752 1024 CDD homeodomain 69 126 IPR001356 GO:0003677
Gso19g1752 1024 MobiDBLite consensus disorder prediction 963 977 - -
Gso19g1752 1024 PANTHER HOMEOBOX PROTEIN LUMINIDEPENDENS 1 1024 - -
Gso19g1752 1024 MobiDBLite consensus disorder prediction 712 732 - -
Gso19g1752 1024 MobiDBLite consensus disorder prediction 134 177 - -
Gso19g1752 1024 SMART HOX_1 68 130 IPR001356 GO:0003677
Gso19g1752 1024 MobiDBLite consensus disorder prediction 686 700 - -
Gso19g1752 1024 MobiDBLite consensus disorder prediction 686 732 - -
Gso19g1752 1024 MobiDBLite consensus disorder prediction 446 490 - -
Gso19g1752 1024 MobiDBLite consensus disorder prediction 406 424 - -
Gso19g1752 1024 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 1024 - -
Gso19g1752 1024 Gene3D - 66 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1752 Gso-Chr19 46370782 46379176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1752 1 790 Homeobox Transcription Factor Family AT4G02560 47.972 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gso19g1752 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1752 - - gmx:100806633 1999.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1752 19 46370782 46379176 Gso3g1784 3 43609913 43618298 GST