Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1748 ATGGTGGAAAGGAGGAGAAAGCCTCTGATACTGTGTTCCACCAAACATCTCATAAATTCCACTGTTCCAACCAACAACCTCTTCCCCCATGAATCTCTTCCCACTTTCCGTTTACCCGTTGGGATTCTCCGATTCTCCAACCCCGCAAACCCCTCTCTCGACCACTCTGCACTTCTCGCTCTCTCCACTAGTCTTCTCAAAACCCTCTCCATCACTTCAGGCTCTCCGGTTTTGGTCAAGAATGTTGATACGAATACACAGAAAATTGCAGTGGCTATTGCTCTTGATCCACCAGGCACCGCCACTAATATGGACTCACCCTCTTCTTCAAATTCTCGAATAATGCTTGTTTTTCCTTCTTGTGATTTCCCTTCTAGTGGTTCTGTGTTAGATGATCAAGTAGCTTATATATCTCCTCTTTTAGCCTTTAACCTTAACTTGCACGTGACATGCTTAAAATCTATTCTTCACCACGGGCAAGATGCTTTAGCTTCTTATTTCAAAAGGGGTGATGAGGATGCCACTAAAAGCACTGTGGATTTTGTTATCAACGTAGAATTGGAACCACTTGCTCAACCTCCAAAATTTGCCTCTCTCCTGAGGGTTTCTTTTGTGAAGATACCTGAATGTGGCATCCTTGAATCCATTAGAGCAAGTTCGCCTGTTGAGTCACAAGAGCGGCAAGACATGATCGACTTGGAGTTGCAAAAGTACTTTGAAGTCGATAGGTATTTGTCGAAGGGAGATGTTTTTGGAATTAAAATAAGCTGGAACTGCAATTCCCCCATTTGCATTCCTTGCAATCAAAGATCATTAAATAAAAATGACAACCTTGTCTGCTTCAAGGTTGTTGGTATGGAACCTTCAGATGAGCCGGTTTTCCGTGTCAATAACACCTTAACTGCTCTTGTGCTGGTAGGGAGTTCTCCATCCGCACTCCCTCCAGATTTGTTGATTGGTGGACAAGCAGAAGGACCTGTGCCTTTGCAAGGGGACACTGTGAACATCTTGGCTTCAATACTTACACCAACTTTTTGTCCGTCAGTGCTTTCTTCCAAGTTTAGAGTTTCAGTTCTATTGTATGGCTTGGCAGGGTGTGGGAAAAGGACTGTTGTTAGATATGTTGCTCGTCAACTGGGCGTGCATGTGGTGGAATATAACTGTCATGATCTAATGGTGTCTGATAGGCAATCTGTTGCTTTAGCACAAGCTTTCAAGACAGCTCGAAGATACTCACCAGCAATACTTCTTCTTCGTCATTTTGATGTTTTTCGTGATTCACAATCGCCTGAGGTTTCACCACATGACCAAAGAGGAAATACATCTGAAGTTGCATCAGTTATTAGGAAATTCACTGAGCCAGTCAATGAACATGGTGATAGTAGTGTCCCAGGGAAATCAAACAGTGAATCTGTGGAGAAGAATGCTGAAAAGACAAGTGGGCATCAGGTCCTATTGATTGCTGCTGCAGACAGTTCAGAAGGTCTGCCTTCGACTATCAGACGCTGTTTTAGCCACGAAATAAGCATGGGGGCTTTGACTGAAGAGCAAAGGGCTGAAATGCTATTCCAGTCACTGCAAAGTGTTTCCGGACTCCTCTCTAATACTAATTCAGAAGCTTTAGTAAAAGAAATAGTTGGGCAGACATCTGGTTACATGCCCAGGGATATATGTGCTTTAATTGCTGATGCTGGTGCCAACTTATTTCCCAGAAACAATGCTAAAGTAGACAAAGATGTACATGATGATGTAGGTAGTTCCCTTAGTTCCAAGATGGCAGAGGACAACAATCACGGGAAAGTTTCACCTCAGATTACTGGAAAAGAAGACTTGTTGAATGCTTTGGAACGATCAAAGAAAAGAAATGCATCAGCATTGGGTACTCCAAAGGTTCCGAATGTGAAATGGGAGGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATTCTGGATACTGTTCAGTTACCTCTCCTGCATAAAGATCTATTTTCATCTGGATTACGTAAGCGATCTGGTGTTCTTTTGTATGGTCCCCCTGGAACTGGCAAAACATTATTAGCAAAAGCTGTTGCTACAGAGTGCTCCTTAAATTTTCTTAGTGTGAAAGGTCCTGAACTGATCAACATGTACATTGGAGAGTCTGAAAAGAATGTTCGAGACATTTTCCAGAAGGCCAGATCAGCACGTCCATGTGTCATCTTCTTTGATGAGCTTGATTCTCTTGCACCAGCTCGAGGTGCCTCTGGAGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATTGATGGGTTAAGTGATTCCACACAGGATCTGTTTATTATAGGTGCAAGTAATAGACCAGATTTGATAGACCCAGCACTTCTGCGCCCTGGTCGATTTGACAAACTGCTATATGTCGGAGTTAACTCCGATGCATCTTACAGGGAGCGGGTCCTGAAAGCTCTTACCCGAAAGTTCAAATTGCATGAAGATGTCTCACTTTACTCCATAGCAAAAAAATGTCCACCAAACTTCACTGGTGCAGACATGTATGCTTTGTGTGCAGATGCTTGGTTCCATGCTGCAAAGCGCAAAGTTTTGAGAGCAAATCCAGAGTCTTCCAGCCAAGATAATGAAGCAGATTCTGTTGTTGTGGAATACAATGATTTCATCCAGGTCTTAGAAGAGCTGTCGCCTTCCCTCTCCATGGCTGAGCTCAACAAGTACGAGCAACTGAGAGATCAGTTTGAAGGCACCTCTAAATGA 2760 0.4337 MVERRRKPLILCSTKHLINSTVPTNNLFPHESLPTFRLPVGILRFSNPANPSLDHSALLALSTSLLKTLSITSGSPVLVKNVDTNTQKIAVAIALDPPGTATNMDSPSSSNSRIMLVFPSCDFPSSGSVLDDQVAYISPLLAFNLNLHVTCLKSILHHGQDALASYFKRGDEDATKSTVDFVINVELEPLAQPPKFASLLRVSFVKIPECGILESIRASSPVESQERQDMIDLELQKYFEVDRYLSKGDVFGIKISWNCNSPICIPCNQRSLNKNDNLVCFKVVGMEPSDEPVFRVNNTLTALVLVGSSPSALPPDLLIGGQAEGPVPLQGDTVNILASILTPTFCPSVLSSKFRVSVLLYGLAGCGKRTVVRYVARQLGVHVVEYNCHDLMVSDRQSVALAQAFKTARRYSPAILLLRHFDVFRDSQSPEVSPHDQRGNTSEVASVIRKFTEPVNEHGDSSVPGKSNSESVEKNAEKTSGHQVLLIAAADSSEGLPSTIRRCFSHEISMGALTEEQRAEMLFQSLQSVSGLLSNTNSEALVKEIVGQTSGYMPRDICALIADAGANLFPRNNAKVDKDVHDDVGSSLSSKMAEDNNHGKVSPQITGKEDLLNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYSIAKKCPPNFTGADMYALCADAWFHAAKRKVLRANPESSSQDNEADSVVVEYNDFIQVLEELSPSLSMAELNKYEQLRDQFEGTSK* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1748 919 MobiDBLite consensus disorder prediction 583 604 - -
Gso19g1748 919 Gene3D - 334 529 IPR027417 -
Gso19g1748 919 Gene3D - 807 893 - -
Gso19g1748 919 PANTHER PEROXISOME ASSEMBLY FACTOR 2 37 915 - -
Gso19g1748 919 MobiDBLite consensus disorder prediction 589 603 - -
Gso19g1748 919 CDD AAA 348 418 - -
Gso19g1748 919 Pfam ATPase family associated with various cellular activities (AAA) 358 509 IPR003959 GO:0005524|GO:0016887
Gso19g1748 919 Pfam ATPase family associated with various cellular activities (AAA) 673 805 IPR003959 GO:0005524|GO:0016887
Gso19g1748 919 SMART AAA_5 354 514 IPR003593 -
Gso19g1748 919 SMART AAA_5 669 809 IPR003593 -
Gso19g1748 919 MobiDBLite consensus disorder prediction 455 478 - -
Gso19g1748 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 582 IPR027417 -
Gso19g1748 919 ProSitePatterns AAA-protein family signature. 776 794 IPR003960 GO:0005524|GO:0016887
Gso19g1748 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 632 913 IPR027417 -
Gso19g1748 919 CDD AAA 667 805 - -
Gso19g1748 919 Gene3D - 631 908 IPR027417 -
Gso19g1748 919 PANTHER AAA-FAMILY ATPASE 37 915 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1748 Gso-Chr19 46330550 46337545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1748 639 864 Calmodulin-binding Proteins AT3G56690 39.648 5.12e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1748 K13339 - gmx:100820183 1781.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g0408 10 4337956 4338832 Gso19g1748 19 46330550 46337545 PCT