Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1736 ATGAGTGGTGCTGAAGCGCGACCTTGTGACTACTGTGGCAACTCCACAGCACTTCTCTATTGCAGAGCCGATTCAGCAAAACTCTGTTTCTCGTGCGATCGCGAAGTTCACTCCACCAACCAGCTCTTCTCCAAGCACACGCGCACGCTGCTCTGCGACGCATGCGATGATTCCCCTGCGACCATACTCTGTTCAACCGACACCTCTGTTCTGTGCCAGAACTGCGACTGGGAGAACCACAACCCTGCGCTCTCCGATTCCCTTCACGAGCGAAGGCCCCTCGAAGGCTTCACTGGGTGCCCTTCCGTCTCCGAACTCTTGTCCATCGTGGGGTTTTCGGATATCAGCAAAAAATCTCTGCTTTTTTCGCCTCAGGGAAGTGTCGCTGATGGGTTCTTCGGCGCCAGCGAGATTGAAGGGCTTTCGGATATGTTCGTGTGGGATGCGCCTTCTTTTGTTACGCTTGATGATTTGATTTCTTCCTCTCCTTCTTCTCATAGCTTTCAGGCCATGAAGGTTCCTCCTCTGCCCAAGAATCGAAAGGCTGCTTGTGGGCAACACAAAGAAGAGATTCTTAGTCAGCTTCGGGAATTGGCCAAGTCTGAGCCTTTGGACCTTGAACCATATGTGCAATCGGGTAACTTGTCCTTGGGTTTTGAACGTGACCCGGAGGCTGATATCTTTCCTTCTCATGAGTGGCATAGAGAAAGCAGCGAGCCTATGCATCAAGTTGTGCCTCCTGACCCATCAATGGGAACTTATACTGAAGAAATTCCAGTTAAACATTCTACTTCTGCTGTTGGGGAAAATCACACCTATGGTGACAATGAAGGGAAACCATCCATTTCTCTCAAGTCTGAAACCCTATCAACTACTCCCAAAGCTGCAGCATGTGAGTTAACAAGCCAAGAAAGAGATTCTGCATTATTACGGTACAAGCAGAAGAAGAAAACAAGGAGATTTGACAAGCACATAAGGTATGAATCACGAAAAGTTCGGGCTGAAAGCAGGGTAAGAGTCAAGGGCCGATTTGCCAAGATGGGACATGAACATTGA 1056 0.4905 MSGAEARPCDYCGNSTALLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDDSPATILCSTDTSVLCQNCDWENHNPALSDSLHERRPLEGFTGCPSVSELLSIVGFSDISKKSLLFSPQGSVADGFFGASEIEGLSDMFVWDAPSFVTLDDLISSSPSSHSFQAMKVPPLPKNRKAACGQHKEEILSQLRELAKSEPLDLEPYVQSGNLSLGFERDPEADIFPSHEWHRESSEPMHQVVPPDPSMGTYTEEIPVKHSTSAVGENHTYGDNEGKPSISLKSETLSTTPKAAACELTSQERDSALLRYKQKKKTRRFDKHIRYESRKVRAESRVRVKGRFAKMGHEH* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1736 351 CDD Bbox1_BBX-like 8 51 - -
Gso19g1736 351 Pfam CCT motif 305 346 IPR010402 GO:0005515
Gso19g1736 351 ProSiteProfiles CCT domain profile. 305 347 IPR010402 GO:0005515
Gso19g1736 351 SMART bboxneu5 4 51 IPR000315 GO:0008270
Gso19g1736 351 SMART bboxneu5 52 94 IPR000315 GO:0008270
Gso19g1736 351 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 5 349 - -
Gso19g1736 351 CDD Bbox1_BBX-like 51 94 - -
Gso19g1736 351 ProSiteProfiles Zinc finger B-box type profile. 4 51 IPR000315 GO:0008270
Gso19g1736 351 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 5 349 - -
Gso19g1736 351 ProSiteProfiles Zinc finger B-box type profile. 47 94 IPR000315 GO:0008270
Gso19g1736 351 Pfam B-box zinc finger 51 94 IPR000315 GO:0008270
Gso19g1736 351 Pfam B-box zinc finger 5 49 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1736 Gso-Chr19 46250044 46253700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1736 7 320 C2C2-CO-like Transcription Factor Family AT2G47890 40.798 7.34e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso19g1736 zf-B_box 4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1736 - - gmx:100777428 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1736 19 46250044 46253700 Gso3g1769 3 43492919 43496677 GST
Gso19g1736 19 46250044 46253700 Gso2g1269 2 15719366 15722347 PCT
Gso19g1736 19 46250044 46253700 Gso10g0186 10 1942905 1945795 PCT
Gso2g1269 2 15719366 15722347 Gso19g1736 19 46250044 46253700 PCT
Gso10g0186 10 1942905 1945795 Gso19g1736 19 46250044 46253700 PCT