Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1728 ATGAGAAAGAGGAGAGACATGGACTCTCCAAACACACAACAAGGCCTCCTTCCCTCCAAGAAAGGTGTGAAAGATAGTTTGTACACTGAACTGTGGCGTGCATGTGCTGGGTCATTCGTTTATGTTCCTCGCGAAGAAGAGACGGTTCTCTACTTCCCTCAAGGTCACTTGGAGCAGGTTGCTGCATATACTCAGCATCAGCAAGATGGTCACATGGAAATTCCTGTGTATGATTTGCCTTCTAAGATCTTATGCAAGATTTTGCATATTGAATTAAAGGCCGAAGCCTTCTCAGACGAGGTTTATGCTCAAGTTACATTAGTTCCGGCGCTCAAGCAAGATAACCTTCGTTTGGAGGTGGAAGAGAATGATCAGATACCTTCCATAACTACAACCTATACTTTTAGTAAGATACTCACTCCATCAGACACAAGTACACATGGTGGATTCTCTGTTCCGAAGAAACATGCTGATGAATGCTTCCCTCCGCTGGACATGACTCAACAAACACCAGCGCAGGAAATTGTTGCAAAGGACTTGAATGGGTTTGAGTGGCATTTTCGACACATATATCGTGGTAAGCCGAAACGACACTTGCTTACTAGCGGTTGGAGCACATTCGTGAATGCAAAGAAACTTGTTGCTGGAGATTCATGCATTTTCGTTAGAGCGGAATCTGGAGAAATTCGTGTTGGGATTCGTCGGGCAACGGAACATCTCAGCAATGTATCGCAATCTTCATCTCTGATATCGGGTCATAGCATGCAACTTGGAATTTTGGCTAGTGCTTCCCACGCTGTTAGCTCAGGAACCATGTTTATTGTCTATTACCACCCATGGACAAATCCCTTTGAATTTATTGTTCCTTTGCGAACCTATCTGAAGTCAACTGTACCAGACTATCCAATTGGAATGAGGGTACAAATGCAGCATGAAGTTGAAGAATCTTTAAGAAGACATGCAGGTACGATAATTGGTCATGAAGATATCGACAAGATTAGGTGGCCTGGTTCTGAATGGAGATGTCTCAAGGTGCAATGGGATGCCGTACTAGATGACAAAATGAATCCTGAAAGGGTTTGTCCTTGGTGGATTGAGCCCTTGGAATCTGCCAAGGAGAAGAAGCAAGTTCCTGCTCTCCCCACAACAAAAAAAGCACTTGCACTTAACCAGCGCTCTTTGCCTGGAATAAGTAGCTTTGGCATGCATGATGGTCAGAATTCAGCTGGGCCTTCATCTCAGACTCGGAGAGAAGATAGAGACTTGCAAGGTCAAGATTACAGCGGCATACATTCTGCACAGCCTTTACAAAGAGCACCACCAACTGATGTTATCCACCCCTCGAAGGTCCCAATCCGTGGCTCGCGGTTTGGGAAGGAGAATCCGAATCAGCTTCCCTTTCCCATGCAAGGTCCTCTTCATAAATCTCTTAGCAGATCAATGTCACTTACACATGAAGACCTGTCAATTACAAGCTCAAATCTAAGCTCCATTGGTTCTGAATCTCTGGGATGGCCTTCAACTGAATCTAGAAATGAAAATGATGTTCCTTTTGGGCAGCCTGGCAGTTGCAGTACATTCAAGCTTTTTGGAGTTAGCTTAATTGACCGCTCCTCGGAGCTCCCTTCATTGCAATCTGCTGCTTTCAACAAGACTTCGAGTCTCCTTTCTAATCCTCCAATGCGTGTTGCCCCAGGGAAAACATGTAAGAAGTGTCACCGTGTTAATAATCGGAGCTGCACAAAGGTGCTTAAGTTGGGAACTGCTCTTGGAAGAGCAGTCGACCTTGCACGCTTTCATGGATATACCGAACTCATTGCTGAACTCGACTCCATGTTTGAGTTTCGAGGAAGTTTAATCAATGAAAGCAGTGGATGGCATGTCACATGCATGGATGATGATGGAGACATGATGCAATTAGGAGATTATCCATGGCAGGATTTCCAGGGTGTGGTGCAAAAGATGATCATATGTCCAAAGGAAGGTACTAACAATATCAAGCCAAGCTCCTCAGCAAATCCATCAAGCCTTTAG 2034 0.4474 MRKRRDMDSPNTQQGLLPSKKGVKDSLYTELWRACAGSFVYVPREEETVLYFPQGHLEQVAAYTQHQQDGHMEIPVYDLPSKILCKILHIELKAEAFSDEVYAQVTLVPALKQDNLRLEVEENDQIPSITTTYTFSKILTPSDTSTHGGFSVPKKHADECFPPLDMTQQTPAQEIVAKDLNGFEWHFRHIYRGKPKRHLLTSGWSTFVNAKKLVAGDSCIFVRAESGEIRVGIRRATEHLSNVSQSSSLISGHSMQLGILASASHAVSSGTMFIVYYHPWTNPFEFIVPLRTYLKSTVPDYPIGMRVQMQHEVEESLRRHAGTIIGHEDIDKIRWPGSEWRCLKVQWDAVLDDKMNPERVCPWWIEPLESAKEKKQVPALPTTKKALALNQRSLPGISSFGMHDGQNSAGPSSQTRREDRDLQGQDYSGIHSAQPLQRAPPTDVIHPSKVPIRGSRFGKENPNQLPFPMQGPLHKSLSRSMSLTHEDLSITSSNLSSIGSESLGWPSTESRNENDVPFGQPGSCSTFKLFGVSLIDRSSELPSLQSAAFNKTSSLLSNPPMRVAPGKTCKKCHRVNNRSCTKVLKLGTALGRAVDLARFHGYTELIAELDSMFEFRGSLINESSGWHVTCMDDDGDMMQLGDYPWQDFQGVVQKMIICPKEGTNNIKPSSSANPSSL* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1728 677 CDD B3_DNA 135 235 IPR003340 GO:0003677
Gso19g1728 677 PANTHER AUXIN RESPONSE FACTOR 16 671 - -
Gso19g1728 677 Gene3D - 574 667 - -
Gso19g1728 677 Gene3D - 133 237 IPR015300 -
Gso19g1728 677 Pfam Auxin response factor 263 344 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso19g1728 677 Pfam B3 DNA binding domain 135 236 IPR003340 GO:0003677
Gso19g1728 677 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 671 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso19g1728 677 MobiDBLite consensus disorder prediction 395 413 - -
Gso19g1728 677 SUPERFAMILY DNA-binding pseudobarrel domain 126 265 IPR015300 -
Gso19g1728 677 MobiDBLite consensus disorder prediction 395 467 - -
Gso19g1728 677 ProSiteProfiles B3 DNA-binding domain profile. 135 237 IPR003340 GO:0003677
Gso19g1728 677 SMART B3_2 135 237 IPR003340 GO:0003677
Gso19g1728 677 Gene3D - 301 374 - -
Gso19g1728 677 ProSiteProfiles PB1 domain profile. 578 660 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1728 Gso-Chr19 46158868 46170347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1728 576 670 B3 DNA Binding Superfamily AT5G62000 47.368 1.38e-22 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso19g1728 B3 5.1e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1728 - - gmx:100802387 1359.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1728 19 46158868 46170347 Gso3g1761 3 43412627 43423569 GST