Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1725 ATGGCGGAAGAGAGTAAATCTAGCAGCGAGGAAAGTGTGAAGCTGTTCGTAGGGCAAGTGCCCAAGCACATGACCGAACCCGAACTCCTTGCAATGTTCAAGGAGTTCGCGCTCGTCGACGAGGTCAACATAATCAAAGACAAAGCAACTCGTGCTTCCCGAGGTTGTTGCTTCCTGATTTGTCCGTCAAGGGAGGAGGCGGATAAGGCCGTCAATGCGTGTCACAATAAGAAGACGTTACCCGGGGCATCTAGTCCATTACAAGTGAAGTATGCAGATGGCGAGCTGGAAAGATTAGGTTGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCTCTTGCTGCTTTAGAGGCAATCAATGGAAAGCATAAAATGGAGGATTCGAGTGTTCCCTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGGCAAGCTCGTAGAGCTCAGAAAGCACAGTCCCAAGCTTCTAATGTACCACATACTGATTCTCAGCACCTGTCAATGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGCTTATCAGGCTCCTGGAGGTTATGGCCTCATGCCATACCGCATGCCACCAATGCAGAGTCAACATGGTTACCATAATGTGATGCCTCACATGAATCAAGTAAATGCATTACGGCCTGATCTTGGCCCCAACATGAACCCTAGAAATTATCATGTGCCTCCTGCAAGTTATGTTAGCTCTTATCCTGCTGTGCCAGGTCTACAACATCCTATGGCATATCCTACAGGAATGATTAGTCCAAGGCCCATGAATACTTCTCCTGGTTCAGTTTCACCTGCTGGTGGAAATAACAGCTCTGCTGCATCTTCAGGTGCCAGCAAAAATTCTGGGGGTCAGGTTGAAGGACCACCTGGTGCGAACCTATTTATTTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTACTGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTTGATAAAGCAACTGGTGTTAGCAAATGTTTTGGGTTTGTAAGTTATGATACCCCAGAGGCTGCTCAATCTGCCATCAGTATGATGAATGGATGCCAATTAGGAGGAAAGAAATTAAAGGTCCAGCTTAAGAGGGATAACAAACAGGGTAAACCTTACTGA 1164 0.4519 MAEESKSSSEESVKLFVGQVPKHMTEPELLAMFKEFALVDEVNIIKDKATRASRGCCFLICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLGCAFLKYETKEQALAALEAINGKHKMEDSSVPLVVKWADTEKERQARRAQKAQSQASNVPHTDSQHLSMFGALPMSYVPPYNGYAYQAPGGYGLMPYRMPPMQSQHGYHNVMPHMNQVNALRPDLGPNMNPRNYHVPPASYVSSYPAVPGLQHPMAYPTGMISPRPMNTSPGSVSPAGGNNSSAASSGASKNSGGQVEGPPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDTPEAAQSAISMMNGCQLGGKKLKVQLKRDNKQGKPY* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1725 387 MobiDBLite consensus disorder prediction 258 297 - -
Gso19g1725 387 Gene3D - 272 379 IPR012677 -
Gso19g1725 387 MobiDBLite consensus disorder prediction 262 293 - -
Gso19g1725 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 380 IPR000504 GO:0003723
Gso19g1725 387 PANTHER RNA BINDING PROTEIN 6 99 - -
Gso19g1725 387 PANTHER RNA BINDING PROTEIN 100 374 - -
Gso19g1725 387 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 6 99 - -
Gso19g1725 387 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 100 374 - -
Gso19g1725 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 79 IPR000504 GO:0003723
Gso19g1725 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 374 IPR000504 GO:0003723
Gso19g1725 387 SUPERFAMILY RNA-binding domain, RBD 99 382 IPR035979 GO:0003676
Gso19g1725 387 SMART rrm1_1 303 376 IPR000504 GO:0003723
Gso19g1725 387 SMART rrm1_1 14 90 IPR000504 GO:0003723
Gso19g1725 387 Gene3D - 2 96 IPR012677 -
Gso19g1725 387 CDD RRM3_CELF1-6 304 376 - -
Gso19g1725 387 SUPERFAMILY RNA-binding domain, RBD 11 122 IPR035979 GO:0003676
Gso19g1725 387 MobiDBLite consensus disorder prediction 141 162 - -
Gso19g1725 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Gso19g1725 387 CDD RRM1_2_CELF1-6_like 14 90 - -
Gso19g1725 387 Gene3D - 97 148 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1725 Gso-Chr19 46136461 46141172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1725 295 377 Eukaryotic Initiation Factors Gene Family AT1G22760 38.554 1.26e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1725 K13207 - rcu:8287198 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1725 19 46136461 46141172 Gso3g1758 3 43385976 43390892 GST
Gso19g1725 19 46136461 46141172 Gso2g1260 2 15628980 15633349 PCT
Gso19g1725 19 46136461 46141172 Gso10g0193 10 2019405 2023404 PCT
Gso2g1260 2 15628980 15633349 Gso19g1725 19 46136461 46141172 PCT
Gso10g0193 10 2019405 2023404 Gso19g1725 19 46136461 46141172 PCT