Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1716 ATGGGCGCCAATTCCATGCTCTCCGAGTCCTCTCACGATCTCGACGACCAGATCTCCCAGCTCATGCAGTGCAAGCCACTCTCCGAGCAACAGGTCAGAGGTTTATGTGAGAAGGCTAAGGAGATTTTAATGGATGAAAGTAATGTTCAGCCTGTTAAAAGCCCTGTGACAATTTGTGGCGATATTCATGGGCAATTTCATGATCTTGCTGAACTGTTTCGAATTGGAGGGAAGTGTCCAGATACTAACTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAGACTGTATCGCTCCTTGTGGCACTGAAAGTTCGGTATCCCCAGCGAATTACTATTCTTAGAGGAAACCATGAAAGCCGTCAGATTACTCAAGTATATGGATTTTATGATGAATGCCTTAGAAAGTATGGTAATGCTAATGTTTGGAAGACCTTTACAGACCTTTTTGATTTTTTTCCATTGACTGCATTGGTTGAATCTGAAATATTCTGTTTGCATGGTGGACTGTCACCTTCAATTGAGACCCTTGATAACATAAGGAACTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGCCCCATGTGTGATCTATTGTGGTCTGACCCAGATGACAGATGTGGCTGGGGAATTTCTCCTCGTGGTGCTGGATATACTTTTGGCCAGGATATATCTGAACAATTCAATCACACTAACAGCCTTAAATTGATTGCTAGAGCTCATCAGCTTGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACCATTTTTAGTGCACCTAACTACTGTTACCGATGTGGGAACATGGCTTCCATATTGGAGGTTGATGATTGCAAGGGTCACACATTCATCCAGTTTGAACCTGCTCCTAGGAGAGGAGAACCTGATGTCACTCGTAGAACGCCTGATTACTTCTTATAA 942 0.4289 MGANSMLSESSHDLDDQISQLMQCKPLSEQQVRGLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKTFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNSLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1716 313 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Gso19g1716 313 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Gso19g1716 313 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Gso19g1716 313 PRINTS Serine/threonine phosphatase family signature 152 178 IPR006186 GO:0016787
Gso19g1716 313 PRINTS Serine/threonine phosphatase family signature 181 208 IPR006186 GO:0016787
Gso19g1716 313 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Gso19g1716 313 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Gso19g1716 313 CDD MPP_PP2A_PP4_PP6 13 297 - -
Gso19g1716 313 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-4 CATALYTIC SUBUNIT 1 313 - -
Gso19g1716 313 SMART pp2a_7 27 297 IPR006186 GO:0016787
Gso19g1716 313 Pfam Calcineurin-like phosphoesterase 55 246 IPR004843 GO:0016787
Gso19g1716 313 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
Gso19g1716 313 Gene3D - 6 313 IPR029052 -
Gso19g1716 313 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 313 - -
Gso19g1716 313 SUPERFAMILY Metallo-dependent phosphatases 10 298 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1716 Gso-Chr19 46049665 46055391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1716 35 243 Calmodulin-binding Proteins AT5G63870 34.661 9.13e-33 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1716 K04382 - gmx:100775812 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1716 19 46049665 46055391 Gso3g1746 3 43290793 43296671 GST