Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1713 ATGTCGATATTATCAAGCATGGACATGCCTACCATTGATGTGGACCTTGGGCCTGAAAAGCTTGAAGATGAGAAACAGGGAGGTCCCTTGTTGCATTGTGATCTTTGTGATACAGAAGTAGTTCACAAGTTGGCTCAAATGTTCCTTCCAGGTCTAGCCAGTGCTTGTGTTGATAACACATCGGGAGATCTCTTCAAGACTCCGGGTTCAGTGGCTGTTGATTTGAGGAAGGAAATGATAGAGTATGTTACCCAAAGAAGTGAATCATTTGTTGCTGAGTCTGTTATCTTGGAAGGTGGTCCAGACGGTGAAGAATCAGACCATCCTTTTGATATCATTTCTGATTTCGTTGATGACTTTGTGAGTTCAAAGAGGAATCTGTTTAGTCGAGTTTCGGGATGGTTGCTGAGTGAAAAGAGGGAAGACAGAATAGATGATTTTGTTCAAGAGATGGAAATGAATGGGTTTTGGACACTTGACAGGAGAGAAACAATTGCAGAAACTTTGCTCAAGAATGTTGACTTTGAGAACTCATATCATTGCAACATGAGTTTTAATTCTGCTGAAGAACTTGTCAATCATGTTGATAACTGCAACTTTAGAACTATGATATGTGAAAATGAGGGATGCAATTCCAGATTTTGTGCAGCTCATTTGAAGAATCATGATTCAACTTGTCCTTTCAAGATAATTCCATGTGAACAGAAGTGTTCTGATTGCATTATGAGACGTGAGATGGATAGGCATTGTATAACTATTTGTCCAATGAAGCTTGTAAATTGTCCTTTTTATGTTGTGGGTTGTAGGTCAGCTGTTGCACAATGTATGATTGAAAAACATCGTTTAGATGACGTTCATTCTCACTTGTGGCACTTACTTAAAGGCATCTACAAGCAAGCATATGGGGATGATCTTAAACGACGAGTGGAGCAAATTGTACAGGCATCATCAAGCAGCCGTTTAGCAGAGGCTCGGGATGTTAGATCTTTAAACTTCATTGTCAAGGACATTGAAGCTAAGTTAGGACCTTTCAAAGTGAGTGTTTTGGAGAAAAATAATGCAGAGATTGTTACCAAGAATGACGAAGGGGAAGCTGGTGACACTGAAAAGAGCATGAAGGCTTCAGATATGGTCAATTCACCAGATAAAGCTGAATTGAGTGACATGAAAAATATGAATAATGCAAAGAGTACTACCAAGAATGAAGATAGGGAACCTGTTCCTGTTGAAAATAAAGGTTGTGAAGAGATGGCACAAACTTCAAACACGACAAATTTATCTGATAAAACTGAAGTTGGCCTCCCGAATGATGAGAACAAAGATGCTGCAGCTAGTGAATTAAAAATCAAGGGGGACGAAGAGCACACTCAAACACATAAGGAAAAATTATCAAATGAAGAAGTTAGTGCCCCAGATGAGGGCAGTGCAGAGAATATCATCAAAAGCAAATGTAATGAAGACAATAAATTTGAAGATAAAGACAACGAACAAAGCATACAAAATTCAAAAATGGAAACCAAGGGTGGTTTAGAGAATAATGTTAAGAACAAAGATGGTGACTTAAAAAAGAGCGCACAGACTTCAGACGGGTAA 1593 0.3886 MSILSSMDMPTIDVDLGPEKLEDEKQGGPLLHCDLCDTEVVHKLAQMFLPGLASACVDNTSGDLFKTPGSVAVDLRKEMIEYVTQRSESFVAESVILEGGPDGEESDHPFDIISDFVDDFVSSKRNLFSRVSGWLLSEKREDRIDDFVQEMEMNGFWTLDRRETIAETLLKNVDFENSYHCNMSFNSAEELVNHVDNCNFRTMICENEGCNSRFCAAHLKNHDSTCPFKIIPCEQKCSDCIMRREMDRHCITICPMKLVNCPFYVVGCRSAVAQCMIEKHRLDDVHSHLWHLLKGIYKQAYGDDLKRRVEQIVQASSSSRLAEARDVRSLNFIVKDIEAKLGPFKVSVLEKNNAEIVTKNDEGEAGDTEKSMKASDMVNSPDKAELSDMKNMNNAKSTTKNEDREPVPVENKGCEEMAQTSNTTNLSDKTEVGLPNDENKDAAASELKIKGDEEHTQTHKEKLSNEEVSAPDEGSAENIIKSKCNEDNKFEDKDNEQSIQNSKMETKGGLENNVKNKDGDLKKSAQTSDG* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1713 530 MobiDBLite consensus disorder prediction 359 530 - -
Gso19g1713 530 MobiDBLite consensus disorder prediction 397 411 - -
Gso19g1713 530 MobiDBLite consensus disorder prediction 433 468 - -
Gso19g1713 530 MobiDBLite consensus disorder prediction 510 530 - -
Gso19g1713 530 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 286 IPR013083 -
Gso19g1713 530 PANTHER TNF RECEPTOR ASSOCIATED FACTOR 4 387 IPR043211 -
Gso19g1713 530 MobiDBLite consensus disorder prediction 415 432 - -
Gso19g1713 530 Pfam TRAF-type zinc finger 222 280 IPR001293 GO:0008270
Gso19g1713 530 PANTHER NEUROFILAMENT HEAVY POLYPEPTIDE-LIKE 4 387 - -
Gso19g1713 530 MobiDBLite consensus disorder prediction 479 500 - -
Gso19g1713 530 ProSiteProfiles Zinc finger TRAF-type profile. 222 269 IPR001293 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1713 Gso-Chr19 46016900 46021165 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1713 - - gmx:100799182 1075.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1713 19 46016900 46021165 Gso3g1743 3 43253464 43258890 GST
Gso19g1713 19 46016900 46021165 Gso2g1434 2 27539035 27542089 PCT
Gso2g1434 2 27539035 27542089 Gso19g1713 19 46016900 46021165 PCT