Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1700 ATGCGGAGCTTCAGGATGAGAAACTTGTTGTCCCGTGTCAAAAAGAAAACCATCAAAAACAGAAACAGAAGTTGCATTTCCATTACAAAAGAGTTAGCACATCTAGTGGAACAAGAAGAAGAAGAAGAAGAAGTTAATGAAGAAGGTTTCAACATCAAAAGCTCTGCCCCATCACACACTCACGGTGTTCAACCCTTGGGGAATCTCTATCTGAACACAAGTTCCACCAACTCCAGAGACACTGGCTTAGGTAATCTTCACACCCTTTCGGATGAGCTTGTTCTCGACATTCTCGGGTTTTTGGATTCTACTTCCTTAGGGGTTTTAGCCTCTGTGAGCAAGTCTTTCTATGTGTTCACCAACCATGAACCCCTTTGGAGGAATCTCGTGTTGGAGAATCTTCTCGGTGGGTTTCAGTACAAAGGGTCTTGGAAATCCACTTATGTTTCTGCTTGTTACCCTTCATTTGATAACTTCGCTGTTGCTCTTGGGGGTTTCAAAGTTAGAGACTTTTACTCGGATTATCTCTTCCAGAGTTGGCTCTGTGCTAACCTCGAAATGAAGCCTGAGTGGTTGGAGAGGGATAATGTGGTTCGGAAGAGAGGAATTTCGGTCGAGGAGTTTGTGTTGAATTTTGAAGAGCCTAATAAGCCGGTGCTGTTGGAAGGGTGTATTGATAATTGGGGTGCTTTGAGGAATTGGGATAGGGATTATTTGGTGAGGTTGTGTGGTGATGTTAAGTTTTCAGTTGGGCCAGTGGAGATGAAGCTTGGAGAGTATTTTGGGTACTCGGATCAGGTTAGAGAGGAAAGGCCTTTGTATTTGTTTGATCCTAAGTTTGCTGAGAAAGTTCCAAAATTGGGTGATGAATATGAAGTTCCGGTGTACTTTAGGGAGGACTTGTTTGGTGTTTTGGGCAATGAGAGGCCGGACTACAGGTGGGTTATTATTGGACCTGCTGGGTCTGGATCTTCCTTCCATGTTGATCCGAATTCAACTTCGGCTTGGAATGCAGTGATCAAGGGGTCCAAGAAATGGATTTTGTTTCCTCCTGATGTGATTCCGCCTGGCGTTCATCCTAGTCCTGATGGTGCGGATGTGGCATCTCCTGTTTCAATAATTGAATGGTTCATGAACTTCTATGGCGCCACCAAAAATTGGAACAAGAAACCAATTGAGTGCGTATGTAAAGCTGGAGAGGTGATCTTTGTGCCTAGTGGATGGTGGCATTTGGTGATCAATCTGGAGGAATCTATAGCCATAACCCAAAACTATGTCAGTAGGAGAAATTTGATAAATGTATTGGATTTTTTGAAAAGTCCAAATGCTAGCACACTGGTATCTGGAACAAGGGATCGACTGAATTTGTACGATAAGTTTAAGAATGCTATCGAGGCTTATTTTCCTGGAGAAATTGATGAATTGACTCGGAAAGAAGAAGAGAGAAAGATCCAGCAAAGGAAACTTTCCTTCTGGGATTCTGTCGCGGATACTAATGCGGGAGCTTTCAAGTTCTCTTTCTAG 1524 0.4324 MRSFRMRNLLSRVKKKTIKNRNRSCISITKELAHLVEQEEEEEEVNEEGFNIKSSAPSHTHGVQPLGNLYLNTSSTNSRDTGLGNLHTLSDELVLDILGFLDSTSLGVLASVSKSFYVFTNHEPLWRNLVLENLLGGFQYKGSWKSTYVSACYPSFDNFAVALGGFKVRDFYSDYLFQSWLCANLEMKPEWLERDNVVRKRGISVEEFVLNFEEPNKPVLLEGCIDNWGALRNWDRDYLVRLCGDVKFSVGPVEMKLGEYFGYSDQVREERPLYLFDPKFAEKVPKLGDEYEVPVYFREDLFGVLGNERPDYRWVIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGADVASPVSIIEWFMNFYGATKNWNKKPIECVCKAGEVIFVPSGWWHLVINLEESIAITQNYVSRRNLINVLDFLKSPNASTLVSGTRDRLNLYDKFKNAIEAYFPGEIDELTRKEEERKIQQRKLSFWDSVADTNAGAFKFSF* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1700 507 SMART cupin_9 273 442 IPR003347 -
Gso19g1700 507 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 52 505 - -
Gso19g1700 507 SMART fbox_2 89 129 IPR001810 GO:0005515
Gso19g1700 507 Coils Coil 28 48 - -
Gso19g1700 507 SUPERFAMILY F-box domain 79 151 IPR036047 GO:0005515
Gso19g1700 507 Gene3D - 73 155 - -
Gso19g1700 507 ProSiteProfiles JmjC domain profile. 282 442 IPR003347 -
Gso19g1700 507 Pfam Cupin-like domain 207 425 IPR041667 -
Gso19g1700 507 Pfam F-box-like 91 131 IPR001810 GO:0005515
Gso19g1700 507 SUPERFAMILY Clavaminate synthase-like 199 438 - -
Gso19g1700 507 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 52 505 - -
Gso19g1700 507 ProSiteProfiles F-box domain profile. 83 129 IPR001810 GO:0005515
Gso19g1700 507 Gene3D Cupin 178 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1700 Gso-Chr19 45926204 45929123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1700 77 431 Glycosyltransferase AT1G78280 39.835 3.24e-78 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso19g1700 Cupin_8 1.6e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1700 - - gmx:100782241 1032.71