Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1696 ATGGCGGTGAGCATGGAAAATGCAAGCACGTCTAGCTTAGCGAGAACGAAATCGGATCAGCTACTGGAGACGGTGGCCACAACAGCTGAGAAGTCGCCACCTTCGGCGGAGGGAGGCGGGGTCCTGTCAAGGAAATCGAGCTGGAGGATGACGGCGTCGTCGCCGGGTGGCGGCGGTGGGAGAAACACATACATAAGGAAGGCAAGGAGCGCTCAGTTGAAGGTAGAGGTGGACGAGGTTGGCAGCGGCGTGGCTCTTAGCCGAGCTTCCAGCGCCAGCTTGGGCCTCTCATTCTCCTTCACCGGCTTCACTCTCCCTCCCGATGAAATCGCCGATTCCAAACCATTCAGCGACGATGATATCCCGGAGGATATTGAAGCTGGAACTCCTAAGCCAAAGTTTCAGACGGAACCTACTCTGCCAATATATCTAAAGTTCACAGATGTGACATACAAAGTAGTGATGAAAGGCATAACTACAACTAAGGAGAAGGATATCTTAAAGGGGATCACTGGTTCTGTAAATCCTGGGGAAGTTTTGGCATTGATGGGTCCGTCAGGAAGTGGAAAGACATCTTTGTTAAATCTGCTTGGAGGAAGGTTGATTCAATCCACAATTGGTGGCTCTATCACTTACAATGATCAACCTTATTCCAAGTTCCTAAAGAGCAGGATTGGATTCGTGACACAAGACGATGTTCTGTTTCCTCACCTTACTGTAAAAGAAACATTGACTTATGCAGCCCGCCTAAGATTGCCAAATACATTAACGAAAGAGCAAAAGGAAAAACGAGCTTTGGAAGTCATTGATGAGCTGGGGTTGGAGAGGTGCCAAGACACTATGATAGGAGGTTCCTATGTTCGAGGAATATCTGGTGGAGAGAGGAAGAGAGTTTGTATTGGCAATGAGATCATAATCAACCCTTCACTTCTGTTTCTTGATGAACCAACTTCTGGTTTGGATTCTACAACAGCGTTAAGGATAGTTCAGATGCTACAAGACATAGCAGAGGCTGGTAAAACCGTGGTGACAACAATCCATCAACCATCAAGCAGACTCTTTCATAAATTTGATAAGTTGATCCTTCTAGGAAAAGGGAGTTTGCTGTACTTTGGAAAAGCATCTGATGCAATGGACTATTTCCAGTTTATAGGCTGTGCACCTCTTATTGCCATGAACCCAGCAGAGTTTTTATTAGACCTTGCAAATGGAAACGTAAATGATATTTCTGTGCCATCAGAGTTAAAGGATATAGTGCAGGTGGGAAATGCTGAAGCTGAAACATGCAATGGGAAACCTTCAGCCTCAGTTGTACAAGAGTATCTGGTGGAGGCATATGATTCTCGAGTCGCAGAAATAGAGAAGACAAAGTTAATGGTTCCTGTCCCTCTTGATGTAGAACTGAAGTCTAAGGTTTGTTCTTGTAAAAGACAGTGGGGAGCAAGTTGGTTTGAGCAATTTTCCATATTATTTTCAAGAGGATTCAAAGAACGGAGGCATGACTACTTTAGCTGGTTAAGAATCACCCAAGTTCTAGCCACTGCAGTCATCTTAGGATTACTCTGGTGGCAATCAGATGCTAAAACACCTAAAGGTTTGCAAGACCAGGCCGGACTGCTTTTCTTTATTGCTGTGTTTTGGGGATTCTTTCCTGTGTTCACTGCAATATTCACATTTCCTCAAGAGAGAGCCATGCTGACTAAGGAACGAACAACCGATATGTACAGACTAAGTGCTTATTTCGTGGCTAGAACTACAAGTGACCTTCTACTGGACCTGGTGCTACCAGTGTTTTTCCTCCTTCTTGTTTATTTCATGGCCAATTTGAGACTCGGTTCAGGGCGTTTTTTCTTTAGTATTCTTACCGTTTTTCTCTGCATCATAGCAGCTCAGGGTCTTGGACTTGCTATAGGGGCTACACTTATGGACTTAAAAAGGGCAACAACTTTGGCTTCAGTAACTGTGATGACTTTCATGCTGGCTGGAGGGTTTTTTGTGAAGAAAGTCCCCATATTTATATCATGGATTCGCTACATATCTTTCAACTACCATACGTATAAACTTTTGCTCAAGGTTCAATATGAACACATTACACCTACCATAGATGGGATCAGAATTGACAGTGGATTCAGAGAGGTTGCTGCTCTGACGGCCATGGTTTTTGGTTACCGTTTATTGGCATATCTTTCATTGCGGCGGATGAAACTTCAAGCTGGAAATTAA 2223 0.4431 MAVSMENASTSSLARTKSDQLLETVATTAEKSPPSAEGGGVLSRKSSWRMTASSPGGGGGRNTYIRKARSAQLKVEVDEVGSGVALSRASSASLGLSFSFTGFTLPPDEIADSKPFSDDDIPEDIEAGTPKPKFQTEPTLPIYLKFTDVTYKVVMKGITTTKEKDILKGITGSVNPGEVLALMGPSGSGKTSLLNLLGGRLIQSTIGGSITYNDQPYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPNTLTKEQKEKRALEVIDELGLERCQDTMIGGSYVRGISGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASDAMDYFQFIGCAPLIAMNPAEFLLDLANGNVNDISVPSELKDIVQVGNAEAETCNGKPSASVVQEYLVEAYDSRVAEIEKTKLMVPVPLDVELKSKVCSCKRQWGASWFEQFSILFSRGFKERRHDYFSWLRITQVLATAVILGLLWWQSDAKTPKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERTTDMYRLSAYFVARTTSDLLLDLVLPVFFLLLVYFMANLRLGSGRFFFSILTVFLCIIAAQGLGLAIGATLMDLKRATTLASVTVMTFMLAGGFFVKKVPIFISWIRYISFNYHTYKLLLKVQYEHITPTIDGIRIDSGFREVAALTAMVFGYRLLAYLSLRRMKLQAGN* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1696 740 Pfam ABC-2 type transporter 485 694 IPR013525 GO:0016020|GO:0140359
Gso19g1696 740 PANTHER PIGMENT PERMEASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 32 734 - -
Gso19g1696 740 Gene3D - 143 384 IPR027417 -
Gso19g1696 740 SMART AAA_5 176 367 IPR003593 -
Gso19g1696 740 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 144 390 IPR003439 GO:0005524
Gso19g1696 740 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 32 734 - -
Gso19g1696 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 384 IPR027417 -
Gso19g1696 740 MobiDBLite consensus disorder prediction 1 31 - -
Gso19g1696 740 CDD ABCG_EPDR 141 372 - -
Gso19g1696 740 Pfam ABC transporter 167 318 IPR003439 GO:0005524
Gso19g1696 740 MobiDBLite consensus disorder prediction 1 64 - -
Gso19g1696 740 Coils Coil 736 740 - -
Gso19g1696 740 ProSitePatterns ABC transporters family signature. 290 304 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1696 Gso-Chr19 45890485 45899746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1696 166 404 Calmodulin-binding Proteins AT2G36910 27.755 2.48e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1696 K05681 - gmx:100796008 1399.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1696 19 45890485 45899746 Gso3g1729 3 43133068 43142570 GST
Gso19g1696 19 45890485 45899746 Gso2g1612 2 37154765 37174083 PCT
Gso19g1696 19 45890485 45899746 Gso10g0791 10 11243016 11254278 PCT
Gso2g1612 2 37154765 37174083 Gso19g1696 19 45890485 45899746 PCT
Gso10g0791 10 11243016 11254278 Gso19g1696 19 45890485 45899746 PCT