Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1693 ATGCATTCCCAGAATGTTGTAGAGATGGAAGGCAAGACAGAAATTCGTATGACATCAGCTGCTGCCTTTGTTGAAGGGGGGATTCAAGAATCCTGTGATGATGCTTGCAGCATATGCCTTGAGGAGTTTTGTGCAAGTGATCCTTCGACGGTCACTACCTGCAAGCATGAGTTTCACCTGCAGTGCATTCTCGAATGGTGTCAGAGAAGCTCCCAGTGTCCTATTTGCTGGCAACCTATTAGCTTGAAGGATCCTACTAGTCAAGAATTGTTTGAGGCAGTAGAGCAGGAGAGAAGCTGGAGGGCTACCCCTTCAAGAAATGCTGCTATTTTTCATCACCCAGCCTTTGGTGATTTTGAATTGCAGCATTTGCGCATGAATGCAAATGATGCTGACTTTGAAGAGAGAATTATTCAACATTTAGCTGCTGCTGCAACGATGAGGAGAGTGAACCAGCTTGGTCGGAGGGAAGGGCAGCAAACTCGTTCATCACCTCATGTTCATCCACACTTCTTAGTGTTCTCTAATCAGCCTATTGCGCCTTCATCAGGTCTTGATCCAGTTTCCAGAGGGGAAAATGACCCAACAGCAATTCCTAATAGAAGTCCATCTGCCCCAATAACATCTGATGGAAATGAAGCATCGCAGCAGATCCTGCACCTTCAAACTCAAAGCTCTTCTTCAGCTTCTGGATCTCCTGTCATGGCTACAAATCGCCAAGGAATTTACTCTAATGATAGAGGCTCTACTGCTCGTTCTTCTCCAGTGGTCCAAGATAGAGCAGAATCATCTGAATTGCAGTCATTTTCTGATTCTCTGCGGTCCAGACTTAATGCGGTGTCCATGAGATACAAAGAGTCAATCTCAAAGGGCACTAGGGGATGGAAGGAGAGGCTGTTCTCGCATAGTTCTTCCATGTCAGAACTTGGTTCAGAAACAAGGAGGAGAGAGATGAAAGCTGGAATTGCTAGTGTATCCCGATTGATGGAATCCCTTGAAACTAGTGAAAATAATAGAGCTGTGGGTACTTCTTTGTCAAATCAAAATCATATAGAGGATAGTTCCATGGGAGGGGTGAGCAACCAGAACAATGTTGAAGCTAGTGGAGAGAAATCTTCACATGATGACAATACTCCAGCTGCATGTTCTGCTAGTTCACATTTAAATTGA 1170 0.447 MHSQNVVEMEGKTEIRMTSAAAFVEGGIQESCDDACSICLEEFCASDPSTVTTCKHEFHLQCILEWCQRSSQCPICWQPISLKDPTSQELFEAVEQERSWRATPSRNAAIFHHPAFGDFELQHLRMNANDADFEERIIQHLAAAATMRRVNQLGRREGQQTRSSPHVHPHFLVFSNQPIAPSSGLDPVSRGENDPTAIPNRSPSAPITSDGNEASQQILHLQTQSSSSASGSPVMATNRQGIYSNDRGSTARSSPVVQDRAESSELQSFSDSLRSRLNAVSMRYKESISKGTRGWKERLFSHSSSMSELGSETRRREMKAGIASVSRLMESLETSENNRAVGTSLSNQNHIEDSSMGGVSNQNNVEASGEKSSHDDNTPAACSASSHLN* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1693 389 CDD RING-H2_PA-TM-RING 36 76 - -
Gso19g1693 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 8 386 - -
Gso19g1693 389 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 8 386 - -
Gso19g1693 389 SMART ring_2 36 76 IPR001841 -
Gso19g1693 389 MobiDBLite consensus disorder prediction 195 265 - -
Gso19g1693 389 MobiDBLite consensus disorder prediction 347 389 - -
Gso19g1693 389 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Gso19g1693 389 MobiDBLite consensus disorder prediction 176 265 - -
Gso19g1693 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 85 IPR013083 -
Gso19g1693 389 Pfam Ring finger domain 35 76 IPR001841 -
Gso19g1693 389 SUPERFAMILY RING/U-box 28 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1693 Gso-Chr19 45867379 45874693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1693 33 84 C3H Transcription Factor Family AT4G00335 46.154 3.97e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1693 K19043 - gmx:100819110 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1693 19 45867379 45874693 Gso3g1726 3 43107105 43112434 GST
Gso19g1693 19 45867379 45874693 Gso2g1635 2 38474527 38478892 PCT
Gso19g1693 19 45867379 45874693 Gso10g0749 10 10515265 10519577 PCT
Gso2g1635 2 38474527 38478892 Gso19g1693 19 45867379 45874693 PCT
Gso10g0749 10 10515265 10519577 Gso19g1693 19 45867379 45874693 PCT