Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1690 ATGATGGGAAACAATTGTCTCGGATCGAAAACCTCAAATGATGCACTATTTCCCTATGTTCTTCCGAGTTCATTCTGGTGGCTTCATCAAACAAGTGTCAAAGAAATTTCTGATGCACCTTCAATTGTGAGTAGAATTCAAGACACACATTTTCTAGAGAATGTTCAAGAAAAGCCACCACTTGTAGTGAAAATTAACAATGAGGAGATGAAGCTGAAACCAGTTCCACTTCCAACCAATAAACACCAGAAAGAGACTAACATGTCTTCAGGGGAACAAATAAGGCAAATACAAAAAATGCCTCACAAAGTTAAGAGGCTACCAATAGGGCTTCAAGCCGAGTCAATTTTGAAGAGAAAAAATGGTAACTTTAAGGAGTACTATAACTTGGGACAAGAGCTTGGGAAGGGGCAATATGGAACAACATTCCTATGCACTGAGAAAGCCACTGGGAAAAAGTATGCATGCAAGTCCATTCCAAAAGTGAAATTGGCTATGGATGATGATGTGGAGGATGTGAGGAGGGAGATTGAGATAATGCATCACTTGGAAGGGTGTCCTAATGTGATATCAATCAAAGGGTCTTATGAGGATGGTGTTGCAGTTTATGTTGTGATGGAGTTGTGTGGAGGGGGTGAACTGTTTGATAGGATAGTGGAAAAGGGGCATTACACAGAGAGAAAAGCAGCTAAACTTGCAAGGACTATAGTCAGTGTTATAGAGGGGTGCCACTCCCTTGGAGTGATCCATCGGGATCTTAAGCCTGAGAATTTTCTTTTCGTTGATGGGAATGAAGAGTCTACTCTTAAGGCCATAGATTTTGGATTGTCTGTTTTCTTCAAACCAGGAGACATTTTTAAGGACGTGGTTGGAAGTCCTTATTACATCGCACCTGAAGTTCTACGGAGGCATTATGGTCCAGAAGTTGATGTGTGGAGTGCAGGTGTGATCATATACATTCTCTTATGCGGAACACCTCCATTTTGGGGTGAATCGGAGCAAGAGATATTTGAAGAAGTTTTGCATGGTGATCTTGATTTCTCTTCAGATCCTTGGCTTAATATCTCTGAAAGTGCTAAAGACTTGGTTAGGAAAATGCTTGTTAGAGATCCTAGAAAACGGATGACAGCACATGAAGTTCTTCGTCACCCTTGGATTCAGGTTGATGGAGTTGCTCCAGACAAGCCTCTTGATTCTGCAGTTTTGAGTCGCCTGAAGCAGTATTCTGTAATGAGCAAGCTCAAAAAAATGGCTCTTAGAGTTATTGCAGAGAATCTCTCAGAAGAAGAAATTTTTGAACTGAAAGTAATGTTTAAGATGATAGACACAGACAACAGTGGTCATATTACTTTAGAAAAACTTAAGGCTGGATTGAAAATGCTTGGTGCTAATCTCAGTGAACCAGAAATTTTGGATCTAATGCAAGCTGCAGATGTTGACAACAGTGGCACAATTGACTACAGAGAATTCATAGCTGCAACATTACATTTAAACAAAGTTGAAAGAGAAGATCATTTAGTTGCTGCTTTTTCATTTTTTGATAGAAGTGGAAGTGGCTACATCTCTCAAGATGAGCTTCTAAAAGCTTGTAAAGAATTTGGCATGGAGAATGTCTGCTTGGAGGAAATGATCCAAGAAGCTGATCAGAATAATGATGGCCGAATAGACTACAATGAATTCGTGGCTATGATGCAGAGAGGCAATGCAGATTTCAGTCAAAACGGTTTAAAGGGTGACACTGATTTTAGTATTGGATTTAGGGAGGCACTATTAGTGTGTTGA 1782 0.4001 MMGNNCLGSKTSNDALFPYVLPSSFWWLHQTSVKEISDAPSIVSRIQDTHFLENVQEKPPLVVKINNEEMKLKPVPLPTNKHQKETNMSSGEQIRQIQKMPHKVKRLPIGLQAESILKRKNGNFKEYYNLGQELGKGQYGTTFLCTEKATGKKYACKSIPKVKLAMDDDVEDVRREIEIMHHLEGCPNVISIKGSYEDGVAVYVVMELCGGGELFDRIVEKGHYTERKAAKLARTIVSVIEGCHSLGVIHRDLKPENFLFVDGNEESTLKAIDFGLSVFFKPGDIFKDVVGSPYYIAPEVLRRHYGPEVDVWSAGVIIYILLCGTPPFWGESEQEIFEEVLHGDLDFSSDPWLNISESAKDLVRKMLVRDPRKRMTAHEVLRHPWIQVDGVAPDKPLDSAVLSRLKQYSVMSKLKKMALRVIAENLSEEEIFELKVMFKMIDTDNSGHITLEKLKAGLKMLGANLSEPEILDLMQAADVDNSGTIDYREFIAATLHLNKVEREDHLVAAFSFFDRSGSGYISQDELLKACKEFGMENVCLEEMIQEADQNNDGRIDYNEFVAMMQRGNADFSQNGLKGDTDFSIGFREALLVC* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1690 593 Pfam Protein kinase domain 128 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1690 593 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 50 572 - -
Gso19g1690 593 PANTHER SERINE/THREONINE-PROTEIN KINASE 50 572 - -
Gso19g1690 593 SUPERFAMILY Protein kinase-like (PK-like) 126 387 IPR011009 -
Gso19g1690 593 ProSiteProfiles EF-hand calcium-binding domain profile. 429 464 IPR002048 GO:0005509
Gso19g1690 593 SMART serkin_6 128 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1690 593 ProSitePatterns EF-hand calcium-binding domain. 478 490 IPR018247 -
Gso19g1690 593 ProSiteProfiles Protein kinase domain profile. 128 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1690 593 Gene3D Phosphorylase Kinase; domain 1 130 213 - -
Gso19g1690 593 MobiDBLite consensus disorder prediction 80 95 - -
Gso19g1690 593 CDD EFh 433 493 IPR002048 GO:0005509
Gso19g1690 593 ProSitePatterns EF-hand calcium-binding domain. 548 560 IPR018247 -
Gso19g1690 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Gso19g1690 593 ProSiteProfiles EF-hand calcium-binding domain profile. 465 500 IPR002048 GO:0005509
Gso19g1690 593 ProSitePatterns Protein kinases ATP-binding region signature. 134 157 IPR017441 GO:0005524
Gso19g1690 593 ProSiteProfiles EF-hand calcium-binding domain profile. 501 536 IPR002048 GO:0005509
Gso19g1690 593 ProSiteProfiles EF-hand calcium-binding domain profile. 540 570 IPR002048 GO:0005509
Gso19g1690 593 Gene3D - 393 570 - -
Gso19g1690 593 ProSitePatterns EF-hand calcium-binding domain. 514 526 IPR018247 -
Gso19g1690 593 Gene3D Transferase(Phosphotransferase) domain 1 214 391 - -
Gso19g1690 593 Pfam EF-hand domain pair 433 494 IPR002048 GO:0005509
Gso19g1690 593 Pfam EF-hand domain pair 506 565 IPR002048 GO:0005509
Gso19g1690 593 SMART efh_1 469 497 IPR002048 GO:0005509
Gso19g1690 593 SMART efh_1 505 533 IPR002048 GO:0005509
Gso19g1690 593 SMART efh_1 539 567 IPR002048 GO:0005509
Gso19g1690 593 SMART efh_1 433 461 IPR002048 GO:0005509
Gso19g1690 593 MobiDBLite consensus disorder prediction 74 95 - -
Gso19g1690 593 CDD EFh 505 565 IPR002048 GO:0005509
Gso19g1690 593 CDD STKc_CAMK 128 385 - -
Gso19g1690 593 SUPERFAMILY EF-hand 425 566 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1690 Gso-Chr19 45840754 45845220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1690 2 587 EF-hand Containing Proteins AT5G04870 62.092 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso19g1690 Pkinase 5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1690 K13412 - gmx:100793377 1191.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1690 19 45840754 45845220 Gso3g1723 3 43083501 43087961 GST
Gso19g1690 19 45840754 45845220 Gso10g1107 10 32126107 32133322 PCT
Gso2g1638 2 38585037 38589690 Gso19g1690 19 45840754 45845220 PCT
Gso10g0745 10 10475735 10481433 Gso19g1690 19 45840754 45845220 PCT