Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1684 ATGCTGCTACTCCTTCTTCAGTTTCTACAACTGAGTTTCATATTGCCTATGGCGATGCAAACTGTTTATCTTAAAAAGCATGAAGGAAATGCACACAATTTTGTGGGCACGTTGTCGTCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCACAATCCGTTCATCAGGGAGAATCTTGTGGCCAAATGAAACCCTTTGCATTGGAGCTGCCTAACTGCATAGACCAACTTGCTGCCACTAAGCTATCAGCAAGAGGAGCTGAGCAAGTGTTGGGTGAAGGGCATACAACTCAGTTCACCATTTTTCCAGATGGTTGTAAAATGTCAGATGATGCGCAAAAGCTTCAGACAACCATATCACTGCAGTCTTCACTTACTGATCCCCACTCTCGTTTTGAGATAGGATTTAGTCAGCCCATGTTATGTGCAAAATATCCTTACACGGATCAATTTTATGGCCTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGTCATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGACGTCGGCAGTCCCGTGCCAAAGCTGTACTTGATCACAAATTGACTAAACGTTGCAAGCCCTATATGCACGAATCTCGCCATCTCCATGCAATGCGGCGACCAAGAGGATCTGGGGGTCGCTTCTTGAACACTAGGAGTTCTATTAACGGAAATGGTAAACTTGGAAATGAAGTGCATAAAACTGTTGGTGAACAATTGCAGTCTAGTGACTCTCAGAGTTCTGAATTCCTTCAATCTGAGGTTGGTACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCTGGTTCAGAGGTGACTAGCATGTATTCGCGGGGAGGTCTCGACAGCTTTTCTCTCAATCATCTTGGATCTGCTGTCCACTCTTTTGCAAACATGATAGATGGTGGGCGCGGTATGATCATACCCCCCAAATGGGTTGCAGCAGCTGGTAACTGCTACAACCTTAAAGTTTGA 1041 0.4428 MLLLLLQFLQLSFILPMAMQTVYLKKHEGNAHNFVGTLSSAASAPWWSAFGSQSVHQGESCGQMKPFALELPNCIDQLAATKLSARGAEQVLGEGHTTQFTIFPDGCKMSDDAQKLQTTISLQSSLTDPHSRFEIGFSQPMLCAKYPYTDQFYGLFSAYAPQISGRIMLPLNMSSDDGPIYVNAKQYHGIIRRRQSRAKAVLDHKLTKRCKPYMHESRHLHAMRRPRGSGGRFLNTRSSINGNGKLGNEVHKTVGEQLQSSDSQSSEFLQSEVGTLNSSKETNGSSPNISGSEVTSMYSRGGLDSFSLNHLGSAVHSFANMIDGGRGMIIPPKWVAAAGNCYNLKV* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1684 346 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 19 345 IPR001289 GO:0003700|GO:0006355
Gso19g1684 346 Gene3D - 176 238 - -
Gso19g1684 346 MobiDBLite consensus disorder prediction 223 293 - -
Gso19g1684 346 ProSiteProfiles NF-YA/HAP2 family profile. 176 236 IPR001289 GO:0003700|GO:0006355
Gso19g1684 346 PRINTS CCAAT-binding transcription factor subunit B signature 179 201 IPR001289 GO:0003700|GO:0006355
Gso19g1684 346 PRINTS CCAAT-binding transcription factor subunit B signature 210 233 IPR001289 GO:0003700|GO:0006355
Gso19g1684 346 MobiDBLite consensus disorder prediction 232 246 - -
Gso19g1684 346 MobiDBLite consensus disorder prediction 253 293 - -
Gso19g1684 346 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 19 345 - -
Gso19g1684 346 SMART cbf3 175 236 IPR001289 GO:0003700|GO:0006355
Gso19g1684 346 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 179 233 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1684 Gso-Chr19 45751065 45755495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1684 6 346 CCAAT-HAP2 Transcription Factor Family AT3G05690 43.333 3.97e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gso19g1684 CBFB_NFYA 2.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1684 K08064 - gmx:100815382 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1684 19 45751065 45755495 Gso3g1714 3 42998723 43003612 GST
Gso19g1684 19 45751065 45755495 Gso2g1656 2 39051870 39057368 PCT
Gso19g1684 19 45751065 45755495 Gso10g0728 10 10088948 10093915 PCT
Gso2g1656 2 39051870 39057368 Gso19g1684 19 45751065 45755495 PCT
Gso10g0728 10 10088948 10093915 Gso19g1684 19 45751065 45755495 PCT