Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1683 ATGGCTGCTACGGCTTCTGTTTCCTCTTCTATCTGCAACAGAATATACAACCTTTCCTTCACACACCCTTCCCTTTCACTCACCAGCAGCAACTTCCCTCAAAGACCCGTATCTCAAAAACCACTCAGTCTCAACCTCGAGTCCCAAAGTTTCGCTCTTTCCTTTCTCCCACTTCACCGTCTTCCCCCACCTTTCGCTGCCTTTGATGGGTTGGAAGTAGCTCAAGATACCACAGAGTCCCAACAAGACGAACCAGAACCAGAAACCGTTGAAAAAACAGAACAAGAGGAAGAGCAAAAGGTTTCAGACTCCAATGATGCTGGGAGGCTCTATGTTGGAAACTTGCCATATTCAATCACTAATTCCGAATTGGGCGAGCTCTTTGGAGAAGCTGGCACCGTGGCGTCTGTTGAGATTGTGTATGATCGTGTCACGGATAGAAGCAGGGGATTTGCATTTGTTACAATGGGGAGTGTTGAGGATGCTAAAGAGGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGACTGTTAAGGTAAACTTCCCAGAGGTACCTAAAGGAGGGGAAAGGTTGGTAATGGGGTCAAAAATACTGAACAGCTACAGAGGCTTTGTAGACAGCCCTCACAAGATCTATGCTGGCAACCTAGGCTGGGGATTGACCTCACAGGGTCTTAGGGAAGCTTTTGCTGAGCAGCCAGGCGTATTGAGTGCCAAGGTCATCTATGAGAGGGACAGTGGAAGATCTCGAGGTTTTGGGTTTGTTTCTTTTGAAACTGCCGAATCTGCACGGGCTGCTTTGGACATCATGAATGGTGTGGAGGTACAAGGTCGGCCCTTGCGGTTGAATTTGGCTGAAGCAAGGACACCTTCATCTCCTCCAGTAATTCAGAAAAATGTAGGAAGCAATGTTGAAAGTTCGGAATTGGTGTCTAGTGCCAGCACATAA 954 0.4748 MAATASVSSSICNRIYNLSFTHPSLSLTSSNFPQRPVSQKPLSLNLESQSFALSFLPLHRLPPPFAAFDGLEVAQDTTESQQDEPEPETVEKTEQEEEQKVSDSNDAGRLYVGNLPYSITNSELGELFGEAGTVASVEIVYDRVTDRSRGFAFVTMGSVEDAKEAIRMFDGSQVGGRTVKVNFPEVPKGGERLVMGSKILNSYRGFVDSPHKIYAGNLGWGLTSQGLREAFAEQPGVLSAKVIYERDSGRSRGFGFVSFETAESARAALDIMNGVEVQGRPLRLNLAEARTPSSPPVIQKNVGSNVESSELVSSAST* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1683 317 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 3 299 - -
Gso19g1683 317 SUPERFAMILY RNA-binding domain, RBD 105 184 IPR035979 GO:0003676
Gso19g1683 317 MobiDBLite consensus disorder prediction 85 104 - -
Gso19g1683 317 Gene3D - 69 191 IPR012677 -
Gso19g1683 317 CDD RRM_HP0827_like 109 185 - -
Gso19g1683 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Gso19g1683 317 Gene3D - 201 296 IPR012677 -
Gso19g1683 317 SMART rrm1_1 109 182 IPR000504 GO:0003723
Gso19g1683 317 SMART rrm1_1 212 285 IPR000504 GO:0003723
Gso19g1683 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 283 IPR000504 GO:0003723
Gso19g1683 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 180 IPR000504 GO:0003723
Gso19g1683 317 PANTHER OS02G0815200 PROTEIN 3 299 - -
Gso19g1683 317 MobiDBLite consensus disorder prediction 74 107 - -
Gso19g1683 317 SUPERFAMILY RNA-binding domain, RBD 208 294 IPR035979 GO:0003676
Gso19g1683 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Gso19g1683 317 MobiDBLite consensus disorder prediction 293 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1683 Gso-Chr19 45747458 45749696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1683 95 290 Eukaryotic Initiation Factors Gene Family AT3G16380 32.500 1.06e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1683 - - gmx:100814852 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1683 19 45747458 45749696 Gso3g1713 3 42995081 42997431 GST