Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1681 ATGAACGACTTGTTATCGGGTTTGTTCTCAAAGGGAAAACAACAACAGCAGCAGCAACAACAACGACATCAGCATGTGATCGAGATAACACAAGGTGGTGGCATGGACTTGGACAAGTTCTTCCAAGAAGTGGAATCAGTGAAGGAGGACTTGAAGGAGTTAGAGCGTCTCCACCTAAGCCTTCGTGCTACAAACCAACACGGAAAAGCGCTTCACAGCCCAAAGGGCGTTAGGGAGCTTAGGTCACGCATGGACCTGGACGTGGCTCTCTCTCTCACCAAAGCGAAGCTCGTGAAGGGTCGCTTGGCGGCTCTTCACCGAACCAACCAAGCGACCCTCTCCTTGCCCGGTTGCGGGCCCGGTTCATACTCCGACCGGACCCGAACCGCGCTTGTGGGGGCCTTGACGAAGAACCTGAGACAGTCCATGGAGAGTTTCAATAAGCTGAGAGAGCAGATATCGTACGAGTACAGAGACACTGTGCAACGTAGATACTACGCTGTCACTGGAGAAAACCCTGATCAAGAAACCATTGACCTCCTCATCTCCACGGGTGAGAGTGAAACTTTCTTACAGAAAGCCATCCAACAGCAAGGGAGAGCCACTATCATGGACACCATCCAAGAGATTCAGGAGAGGCACGACACGATGAAAGAGATAGAGAGAAATCTACACGAGCTGCACCAAGTGTTCATGGACATGGCAGTGCTGATCCAACACCAGGGTGAACACTTGGATAACATAGAGAGCCACATGGAACTTGCAAACTCCTTCGTGAGCATAGGGGTGCAGCATTTGCAGGTTGTGAGGAGTCATCAGAAGAACACCCGCAACTGCACTTGTTTCGCCATACTTCTCTTCATTATCGTGTTGGTCATAGTTCTCCCTATTGTTTTCAGAAATTGA 906 0.5022 MNDLLSGLFSKGKQQQQQQQQRHQHVIEITQGGGMDLDKFFQEVESVKEDLKELERLHLSLRATNQHGKALHSPKGVRELRSRMDLDVALSLTKAKLVKGRLAALHRTNQATLSLPGCGPGSYSDRTRTALVGALTKNLRQSMESFNKLREQISYEYRDTVQRRYYAVTGENPDQETIDLLISTGESETFLQKAIQQQGRATIMDTIQEIQERHDTMKEIERNLHELHQVFMDMAVLIQHQGEHLDNIESHMELANSFVSIGVQHLQVVRSHQKNTRNCTCFAILLFIIVLVIVLPIVFRN* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1681 301 ProSitePatterns Syntaxin / epimorphin family signature. 213 252 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gso19g1681 301 SUPERFAMILY t-snare proteins 34 260 IPR010989 GO:0016020|GO:0016192
Gso19g1681 301 SMART SynN_4 32 158 IPR006011 GO:0016020
Gso19g1681 301 CDD SynN 37 194 IPR006011 GO:0016020
Gso19g1681 301 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 207 269 IPR000727 -
Gso19g1681 301 PANTHER SYNTAXIN-121 14 296 - -
Gso19g1681 301 PANTHER SYNTAXIN 14 296 IPR045242 -
Gso19g1681 301 Pfam Syntaxin 39 242 IPR006011 GO:0016020
Gso19g1681 301 CDD SNARE_syntaxin1-like 206 267 - -
Gso19g1681 301 Gene3D - 37 164 - -
Gso19g1681 301 Pfam SNARE domain 245 295 IPR000727 -
Gso19g1681 301 SMART tSNARE_6 202 269 IPR000727 -
Gso19g1681 301 Gene3D - 196 299 - -
Gso19g1681 301 Coils Coil 37 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1681 Gso-Chr19 45738865 45741250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1681 33 281 SNARE and Associated Proteins AT3G11820 62.651 4.04e-115 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1681 K08486 - gmx:100790221 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1681 19 45738865 45741250 Gso3g1712 3 42989206 42991640 GST
Gso19g1681 19 45738865 45741250 Gso2g1657 2 39067090 39069828 PCT
Gso19g1681 19 45738865 45741250 Gso10g0725 10 10043710 10046280 PCT
Gso2g1657 2 39067090 39069828 Gso19g1681 19 45738865 45741250 PCT
Gso10g0725 10 10043710 10046280 Gso19g1681 19 45738865 45741250 PCT