Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1678 ATGAACGAAATCGATGTTCCTTCGTTCTTTCTCTGCCCCATTTCGCTAGATATCATGAAGGATCCAGTGACGGTCTCAACGGGCATCACCTACGACCGTGAAAGCATCGAAACCTGGCTGTTCTCGAAGAAAAACACGACATGCCCCATTACCAAACTGCCCTTGATAGATTACACCGATCTCACACCAAACCACACCCTTCGTAGACTCATCCAAGCGTGGTGTTCCATGAACGCTTCTCACGGCATCGAAAGGATCCCAACCCCTAAACCCCCCGTTAACAAGAACCAAATTTCGAAGCTTCTCAAAGACGCTTCTCATTCCCCTCTCACATGCCTCAGAAGACTCAAATCCATCTCTTCCGGAAGCGAAACAAATAAGCGGTGCATGGAGGCTTCTGGCGCTGTTGAGTTTCTAGCATCAATTGTAATCAACACCAACCGCAACATTGATTCTTCACATGAGGCTGACTCAAACGACGGATCTGGATTCGAGTTGAAAACAAGTGCATGCGATGAAGCGTTGAGTTTGCTTCATAATCTTCATTTATCCGAACAAGGGTTGAAGACTCTCTTAAGCTTCAGAAACGGCGAGTTTATTGAGTCTTTAACAAGAGTCATGCAAAAGGGGTTCTTTGAATCACGCGCTTATGCTGTGTTCTTGTTGAAATCTATTTCCGAAGTGGCTGAACCAGTGCAACTATTGCATCTAAGACAAGAACTTTTTGTCGAACTGGTACAAGTCCTGAAGGATCAAATTTCACAGAAGACATCAAAGGCGACCCTTCAAACCCTGATCCAATTCTCTCCTTGGGGGAGGAACAGGATCAGAGCTGTGGAAGCAGCTGCTGTTCCTGTTTTGATTGAGCTTCTTCTCGATTGCAAGGAGAGAAAGCCTTGTGAGATGATGCTGGTGTTGTTGGAGCTGCTATGCCAGTGTGCTGAGGGAAGAGCAGAACTTTTGAGCCATGCAGCAGGTCTTGCCATTGTGTCCAAAAAGATTCTAAGGGTTTCGACTTTGGCGAATGATAGAGCTGTTAAGATTATTCTGTCTCTTTCGAGGTTCTCTGCGACTCCACATGTTGTTCAAGAAATGCTGAAACTCGGTGTGGTCGCGAAATTGTGCTTGGTGCTTCAGGTGGATAGTGGAAACAGGGCTAAGGAAAAAGCTAGAGAGATACTCAAATTGCATGCTCGGGCGTGGAGGAATTCTCCATGCATACCGAACAATTTGCTTAATTCATACCCGAATTATGTGTGA 1260 0.4571 MNEIDVPSFFLCPISLDIMKDPVTVSTGITYDRESIETWLFSKKNTTCPITKLPLIDYTDLTPNHTLRRLIQAWCSMNASHGIERIPTPKPPVNKNQISKLLKDASHSPLTCLRRLKSISSGSETNKRCMEASGAVEFLASIVINTNRNIDSSHEADSNDGSGFELKTSACDEALSLLHNLHLSEQGLKTLLSFRNGEFIESLTRVMQKGFFESRAYAVFLLKSISEVAEPVQLLHLRQELFVELVQVLKDQISQKTSKATLQTLIQFSPWGRNRIRAVEAAAVPVLIELLLDCKERKPCEMMLVLLELLCQCAEGRAELLSHAAGLAIVSKKILRVSTLANDRAVKIILSLSRFSATPHVVQEMLKLGVVAKLCLVLQVDSGNRAKEKAREILKLHARAWRNSPCIPNNLLNSYPNYV* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1678 419 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Gso19g1678 419 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 416 - -
Gso19g1678 419 SUPERFAMILY ARM repeat 111 394 IPR016024 -
Gso19g1678 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Gso19g1678 419 PANTHER WDSAM1 PROTEIN 1 416 IPR045185 GO:0061630
Gso19g1678 419 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Gso19g1678 419 SUPERFAMILY RING/U-box 4 82 - -
Gso19g1678 419 CDD RING-Ubox_PUB 10 52 IPR045210 -
Gso19g1678 419 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Gso19g1678 419 Gene3D - 95 405 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1678 Gso-Chr19 45703695 45705325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1678 2 416 U-box Gene Family AT3G52450 56.193 4.31e-171 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1678 - - gmx:100811969 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1678 19 45703695 45705325 Gso3g1707 3 42925444 42927116 GST
Gso19g1678 19 45703695 45705325 Gso2g1665 2 39388660 39390508 PCT
Gso2g1662 2 39213897 39215616 Gso19g1678 19 45703695 45705325 PCT
Gso10g0717 10 9917985 9919753 Gso19g1678 19 45703695 45705325 PCT