Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1674 ATGGCGACATACTTTCATCATGGTAACTCCGAAATCCAATCGGGTGGCGCCGACGGACTCCAAACTCTTGTCCTCATGAACCCCGGCTACATCCACTACTCCGACGCGCCGCAGCAGCAGCAGCAGCAATCCTCACTCGCCGCCGGAAACCTCGTGTTTCTCAACCCTGCCGCGGTTGCCGGGGGCAACAACAACTCGTTTAACCCCCACGCGCCGCCCTCTCACACCCAACAATTCGTTGGGGTCCCTCTCCCTAATTCCCAAGACCTCAACCACCACTCCATGCACGCGCACCACGACGTCTCGGCCCTGCATGGCTTCCTGCCGCGCATGCAGTACAATCCCTGGAACGCGTTCGACCCCACCTCGGCGGCGCGTGAGACTCCACGCGCACAGCAGGGGCTGTCTTTGGGGTTGGGGTCGTTCCGGGAGGGTCAGGCCCCGGCCATGTCCGGCGACGACCTGCGCGTGTCTGGCGGGTCACCGTCATCGGCTTCTGGGGTTACTAACAATGGAGCTTCGGGCATTCATAGCGTGCCTTTGAGCTCAAAGTACTTGAAGGCAGCGCATGAGCTTCTAGAAGAGGTTGCGAATGTCAACAACGGGATTGGCACTGAGTTGAGGAAAAAGAGTGGGGGACAGACCAGGGTGATTGGAGAATCATCCGCAGCAGGAAGTGGAGATGGTTCAGTTGGTGGGGAAGGGAACGGGAAGCGTAGCTCAGAGCTATCAACTGCAGAAAGACAAGAAATTCAGATGAAGAAAGCCAAACTAATCGGTATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCAGCAGCAGATGGAGATAGTGGTTTCATCGTTTGAGCAAGCTGCGGGGATTGGTTCTGCGAGGACTTACACTGCCCTTGCATTGCAAACAATTTCGAAGCAGTTTCGGTGTTTGAAAGATGCGATTGCAGGGCAAGTTCGAACTGCGAATAAGAGCTTAGGAGAAGAAGATTGCTTTGGAGGGAAAATGGAAGGTTCGCGGCTCAAATATGTTGACCATCATCTTCGGCAACAGCGAGCACTTCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCATCCTTATCCTAAGGATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAACTAGGAGCCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACATGGAGGAGATGAAGGATCATGAACAGAATGGATCTGAGGATAAATCAAGCAAGAGCAATGAAGATTCTTCTTCGAAAATGTCAGCCCCACAAGACAAAGGTCCTTCCAATGAAACCGAAGCTAAGAGTTTTAATTCCAAACAAGAAGTTTCCAAGAGCCAGAACACTGCTATGGTTTCAGTTTCTAGACCTTCAACATCACCACTTGGTGTGAATGTGAGAAACCAATCAGGATTCAGCTTCATGGGGTCATCAGAGCTAGATGGGATCACACAAGGAAGTCCCAAGAAACCAAGGAACCATGAGATGATGCATTCCCCAAATAGTGTCCCTTCATTGAACATGGATGTGAAGCCCAATGATGAAAACAGTGAGCAGCTCTCAATGAGATTTGGGGTTGAAAGGCAAGGCAGAAATGAGTCCTCTTTCATGGGAAACCAAACAAACTTCATTGGTGGGTTTGGACAGTACCCAATTGGGGATATTGGAAGGTTTGATGCAGAGCAATTTACACCAAGGTTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTGACTCATTACCAGGAACTCATCAAACATTTCTACCAAACCAAAACATTCAACTTGGAAGAAGCTTGGACATTGGTGAACCAAATGAGTTTGGTGCCATAAGCACTTCCTCTCCTCACTCTACAGCTGCTTATGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGACCTAA 2043 0.4978 MATYFHHGNSEIQSGGADGLQTLVLMNPGYIHYSDAPQQQQQQSSLAAGNLVFLNPAAVAGGNNNSFNPHAPPSHTQQFVGVPLPNSQDLNHHSMHAHHDVSALHGFLPRMQYNPWNAFDPTSAARETPRAQQGLSLGLGSFREGQAPAMSGDDLRVSGGSPSSASGVTNNGASGIHSVPLSSKYLKAAHELLEEVANVNNGIGTELRKKSGGQTRVIGESSAAGSGDGSVGGEGNGKRSSELSTAERQEIQMKKAKLIGMLDEVEQRYRQYQQQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQVRTANKSLGEEDCFGGKMEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKDHEQNGSEDKSSKSNEDSSSKMSAPQDKGPSNETEAKSFNSKQEVSKSQNTAMVSVSRPSTSPLGVNVRNQSGFSFMGSSELDGITQGSPKKPRNHEMMHSPNSVPSLNMDVKPNDENSEQLSMRFGVERQGRNESSFMGNQTNFIGGFGQYPIGDIGRFDAEQFTPRFSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDIGEPNEFGAISTSSPHSTAAYESISMQNPKRFAAQLLPDFVT* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1674 680 MobiDBLite consensus disorder prediction 452 521 - -
Gso19g1674 680 SUPERFAMILY Homeodomain-like 365 432 IPR009057 -
Gso19g1674 680 CDD homeodomain 364 424 IPR001356 GO:0003677
Gso19g1674 680 Coils Coil 248 282 - -
Gso19g1674 680 SMART HOX_1 364 428 IPR001356 GO:0003677
Gso19g1674 680 MobiDBLite consensus disorder prediction 142 172 - -
Gso19g1674 680 MobiDBLite consensus disorder prediction 157 172 - -
Gso19g1674 680 MobiDBLite consensus disorder prediction 434 544 - -
Gso19g1674 680 Gene3D - 367 446 - -
Gso19g1674 680 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 9 622 - -
Gso19g1674 680 MobiDBLite consensus disorder prediction 205 247 - -
Gso19g1674 680 Pfam Associated with HOX 181 315 IPR006563 -
Gso19g1674 680 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 9 622 - -
Gso19g1674 680 MobiDBLite consensus disorder prediction 434 451 - -
Gso19g1674 680 Pfam Homeobox KN domain 381 420 IPR008422 GO:0003677|GO:0006355
Gso19g1674 680 ProSiteProfiles 'Homeobox' domain profile. 361 424 IPR001356 GO:0003677
Gso19g1674 680 SMART prehox3 174 316 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1674 Gso-Chr19 45639579 45644519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1674 1 679 Homeobox Transcription Factor Family AT2G35940 49.526 6.20e-175 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso19g1674 POX 4.1e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1674 - - gmx:100810901 1318.14