Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1655 ATGCCCCTAATATTAGTTCCATTTCTAAAAAGCTCCAAAATTCATTTTGAATCTGCATTTGATTTCTCTCCCATGGGCAAGAAAATGAAGCTCCCTTCCTCTTCTTGGCCCTGGCCCTCCTGCCACCAACCGCGAACCCTCTCTTTCCGAGCCCAAAACGACGCCGCATACTTGGACACGCTGGAGAGCTCCGAGACTTCCTTCTTCACCGTCTCCCCTGACTCCGGAAGCTTCTCAACTGCCTCAGAAGAAGATTCTAGAAGACCCGACTCACTAGAGACCGTCATTCGCGGCTTGCGTTCCGACCGTCTGTTCTTCGAGCCAGACGAGACTAGTTCCATATTAGAAGCCAAAGCAGCAGCAGCAACAACAACAACAACAACAACGTTGCCGTTCAAAGACAGCGTTGTCATGTCCGTGGACTCCCAAGACCCTTACGTCGATTTCCGCAGGTCCATGGAGGAGATGGTGGAGGCGCAGTGCGTCAAGGGCTGGGAGGGTCTCCAAGAGCTTCTGTCTTGGTATTTGAAAGTCAACGGTAAAACCAACCACGGCTATATCGTTGGTGCTTTCGTTGATTTATTGTTCGCTTCTTCTTCCTCACTAGTTTCTTCTTCTGACAATAACTCCCACTCTCCTTCTTCCCCTTTATCGTTTTATAGCTCTTCCTCTTGCAGCACTCGCTGTGTTTCTTGTTTGGAAGCTGAGGTCGAGGTTCATAATAATGATATAGCTACTACTTCTTCTTTCTTGTTAGAACAAGTTAGGGAAGACCAGGCTTCATCTTCTTCTTCTACTTCTACTTCCTCTTTGAATTAA 819 0.4762 MPLILVPFLKSSKIHFESAFDFSPMGKKMKLPSSSWPWPSCHQPRTLSFRAQNDAAYLDTLESSETSFFTVSPDSGSFSTASEEDSRRPDSLETVIRGLRSDRLFFEPDETSSILEAKAAAATTTTTTTLPFKDSVVMSVDSQDPYVDFRRSMEEMVEAQCVKGWEGLQELLSWYLKVNGKTNHGYIVGAFVDLLFASSSSLVSSSDNNSHSPSSPLSFYSSSSCSTRCVSCLEAEVEVHNNDIATTSSFLLEQVREDQASSSSSTSTSSLN* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1655 272 ProSiteProfiles OVATE domain profile. 136 197 IPR006458 -
Gso19g1655 272 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 8 238 IPR038933 GO:0045892
Gso19g1655 272 Pfam Transcriptional repressor, ovate 142 196 IPR006458 -
Gso19g1655 272 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 8 238 - -
Gso19g1655 272 MobiDBLite consensus disorder prediction 72 91 - -
Gso19g1655 272 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 136 196 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1655 Gso-Chr19 45486440 45487749 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Gso19g1655 Ovate 3.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1655 - - gmx:100784899 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1655 19 45486440 45487749 Gso3g1684 3 42725126 42726493 GST
Gso19g1655 19 45486440 45487749 Gso2g1699 2 40389822 40391073 PCT
Gso19g1655 19 45486440 45487749 Gso10g0670 10 8618099 8619248 PCT
Gso2g1699 2 40389822 40391073 Gso19g1655 19 45486440 45487749 PCT
Gso10g0670 10 8618099 8619248 Gso19g1655 19 45486440 45487749 PCT