Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1644 ATGTCATCGATACACCACTACTCACCGGAAACAACACTATACTGGACCAGCGACCACCAGCAACAACAACAACAACAACAACAACAACAACAACAAGCTGCCACGTGGCTTAGTAATTCCCACACTCCCCGTTTCAACCTGAACGAAGACGACGACGAGGAAGACGACGTTGTCGTTTCGGACAAGGCTACTAATAATTTGGCGCAAGAACAGGAGAAAGAAGCGATGTTCGAGAAGCCGTTGACGCCGAGCGACGTCGGGAAGCTGAACCGGCTCGTGATCCCGAAACAGCACGCGGAGAAGTACTTCCCTCTTGACTCGTCCGGCGGTGACTCGGCGGCGGCGAAAGGGCTCTTGCTGAGTTTCGAGGACGAGTCGGGGAAGTGCTGGCGCTTCCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGCTGGAGCCGTTACGTCAAAGACAAACGCCTCCACGCAGGCGACGTCGTTTTGTTCCACAGACACCGCGCCCACCCTCAACGCTTCTTCATCTCCTGCACCCGCCACCAACCCAACCCCAACCCTCCCGCGCACGTTAGCATCAGATCCTCCTCCTACTCTGCGCTCCCAGCTTATCCTACGCACCATCATCATCACCTCCCCTTCCCATACCAACCTCACTCTCTTCACGCACCAGGTGGAGGGTCCCAAGGACAGAACGAAACGACACCAGGAGGGAACAGTTCAAGTGGCAGGGTGCTGAGGCTGTTTGGGGTGAACATGGAATGCCAACCTGATAATGATAATGATTCCCAAAACTCCACACATGAATGCTCCTACACCCACTTATACCACCATCAAACCTCTTCTTATCCTTCTTCAAACCCTCACCATCACATGCTACCTCAACAACCATAA 900 0.5322 MSSIHHYSPETTLYWTSDHQQQQQQQQQQQQQAATWLSNSHTPRFNLNEDDDEEDDVVVSDKATNNLAQEQEKEAMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLDSSGGDSAAAKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVLFHRHRAHPQRFFISCTRHQPNPNPPAHVSIRSSSYSALPAYPTHHHHHLPFPYQPHSLHAPGGGSQGQNETTPGGNSSSGRVLRLFGVNMECQPDNDNDSQNSTHECSYTHLYHHQTSSYPSSNPHHHMLPQQP* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1644 299 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 19 275 IPR044800 GO:0003700
Gso19g1644 299 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 19 275 - -
Gso19g1644 299 SMART B3_2 77 184 IPR003340 GO:0003677
Gso19g1644 299 MobiDBLite consensus disorder prediction 226 246 - -
Gso19g1644 299 CDD B3_DNA 76 171 IPR003340 GO:0003677
Gso19g1644 299 SUPERFAMILY DNA-binding pseudobarrel domain 73 184 IPR015300 -
Gso19g1644 299 MobiDBLite consensus disorder prediction 211 246 - -
Gso19g1644 299 Pfam B3 DNA binding domain 77 180 IPR003340 GO:0003677
Gso19g1644 299 Gene3D - 71 190 IPR015300 -
Gso19g1644 299 MobiDBLite consensus disorder prediction 16 36 - -
Gso19g1644 299 ProSiteProfiles B3 DNA-binding domain profile. 77 184 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1644 Gso-Chr19 45359027 45360930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1644 73 264 RAV Transcription Factor Family AT5G06250 51.220 9.68e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso19g1644 B3 1.7e-27 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1644 - - gmx:100781153 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1644 19 45359027 45360930 Gso3g1675 3 42623638 42625628 GST
Gso19g1644 19 45359027 45360930 Gso2g1704 2 40507308 40510147 PCT
Gso19g1644 19 45359027 45360930 Gso10g0655 10 7987284 7990004 PCT