Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1640 ATGTGGGCAAGCGCCGCAGAAGGTGGTGCTCCGGAGGTGACTCTGGAAACTTCCATGGGTTCTTTCACCTTTGAGCTGTACTACAAGCATGCGCCGAGGACTTGTAGGAACTTCATTGAACTGTCTCGCCGAGGTTACTACGACAACGTTAAATTCCATAGGATCATTAAGGACTTCATAGTACAAGGTGGGGATCCCACTGGAACAGGAAGAGGAGGAGAATCCATATATGGTGCAAAGTTTGAAGATGAGATTAAACGAGAGTTGAAGCACACTGGAGCTGGAATCTTATCCATGGCAAATGCTGGCCCAAACACCAATGGTAGTCAGTTCTTTATTACTCTGGCTCCATGCCCCTCTCTCGATGGAAAACACACGATATTTGGAAGAGTGTGTAGGGGGATGGAAATTATGAAAAGACTTGGCAGCATCCAAACAGATAACAACGATAGGCCCATCCATAACGTGAAGATACTACGTACTTCAGTCAAGGATTGA 498 0.4618 MWASAAEGGAPEVTLETSMGSFTFELYYKHAPRTCRNFIELSRRGYYDNVKFHRIIKDFIVQGGDPTGTGRGGESIYGAKFEDEIKRELKHTGAGILSMANAGPNTNGSQFFITLAPCPSLDGKHTIFGRVCRGMEIMKRLGSIQTDNNDRPIHNVKILRTSVKD* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1640 165 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 1 6 164 - -
Gso19g1640 165 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 6 164 IPR044666 -
Gso19g1640 165 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 47 64 IPR020892 GO:0003755|GO:0006457
Gso19g1640 165 Gene3D - 3 165 IPR029000 -
Gso19g1640 165 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 16 163 IPR002130 GO:0000413|GO:0003755
Gso19g1640 165 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 26 41 IPR002130 GO:0000413|GO:0003755
Gso19g1640 165 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 52 64 IPR002130 GO:0000413|GO:0003755
Gso19g1640 165 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 95 110 IPR002130 GO:0000413|GO:0003755
Gso19g1640 165 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 110 122 IPR002130 GO:0000413|GO:0003755
Gso19g1640 165 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 123 138 IPR002130 GO:0000413|GO:0003755
Gso19g1640 165 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 13 162 IPR002130 GO:0000413|GO:0003755
Gso19g1640 165 SUPERFAMILY Cyclophilin-like 13 163 IPR029000 -
Gso19g1640 165 PIRSF Peptidylpro_ismrse 3 165 IPR024936 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1640 Gso-Chr19 45320502 45323103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1640 13 163 U-box Gene Family AT5G67530 49.007 1.45e-49 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1640 K12733 - gmx:100500406 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1640 19 45320502 45323103 Gso3g1666 3 42565604 42568340 GST