Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1618 ATGAGTAAGCTACAAAGTGATGCACTGAGAGAGGCAATTTCCCAGGTGGTGAGTAATTCAAAGGAGAAAAATCGTAAATTCACCGAGACTATTGAGCTGCAAATTGGATTGAAGAACTATGATCCTCAGAAAGATAAGCGTTTCAGTGGTTCTGTTAAGCTTCCGCATATTCCTCGCCCTAAGATGAAAATCTGCATGCTCGGTGATGCTCAGCACGTTGAAGAGGCGGAAAAAATTGGGCTGGACTACATGGATGTGGAAGCACTGAAGAAACTCAATAAAAACAAAAAACTTGTGAAGAAGCTTGCCAAGAAATATCATGTTTTTCTAGCTTCTGAAGCAGTCATCAAGCAAATTCCTCGTCTTTTGGGGCCTGGTTTAAATAAGGCAGGTAAATTTCCAACATTAGTGACTCATCAGGAGTCCTTGGAGTCAAAAGTTAATGAAACAAAGGCAATGGTGAAGTTTCAACTTAAGAAAGTTCTTTGTATGGGTGTTGCCGTTGGAAATTGCACAATGGAGGAGAAACAGATATTCCAGAATGTACAACTCAGTGTCAATTTCCTTGTTTCATTATTGAAGAAAAACTGGCAAAACGTGAGGTGCTTATACCTGAAGAGTACTATGGGGAGCGCAATCCGCGTATTTTAA 651 0.4025 MSKLQSDALREAISQVVSNSKEKNRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHVFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNCTMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGSAIRVF* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1618 216 ProSitePatterns Ribosomal protein L1 signature. 116 135 IPR023673 -
Gso19g1618 216 SUPERFAMILY Ribosomal protein L1 3 216 IPR023674 -
Gso19g1618 216 Gene3D - 19 210 - -
Gso19g1618 216 CDD Ribosomal_L1 9 215 IPR028364 -
Gso19g1618 216 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 216 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Gso19g1618 216 Pfam Ribosomal protein L1p/L10e family 21 210 IPR028364 -
Gso19g1618 216 Gene3D - 65 154 IPR016095 -
Gso19g1618 216 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 2 214 - -
Gso19g1618 216 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1618 Gso-Chr19 45136385 45141002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1618 1 216 Cytoplasmic Ribosomal Protein Gene Family AT5G22440 88.479 5.77e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1618 K02865 - gmx:100527763 404.445