Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1612 ATGGTGATTGAGGAGGGCGAGATGAAGTCCCAAGGTGAGGTGGAATCATGGCTCCAGCAAGAAGCGAAGAAGAACCACCATTCTCCATTATTCTCATCTTCTTCATATCTGGGAAGACAAACATCATCGATATACTCTCTCACACTGGACGAGTTCCAGCACAGTCTATGCGAGAGCGGCAAGAACTTCGGCTCCATGAACATGGACGAGTTCCTCAGCAGCATCTGGAACGCTGAAGAGAACAGCCAAGCCATCACCAACAACAACGTCCCTCTGTCGTCGACCCTAACAATATTAAGGAAACAGCCAAGCCTCCCTCGCCAACCCTCACTGTCCCTCCCTGCTCCTCTTTGTAGGAAAACCGTTGACGAGGTTTGGTCCCAGATTCAAAAAGAACAAAACAAGAACAACAACATTAGCAATGTTCTTAATGATAATACCGAGTCTGCCCCTCGCCAACCCACTTTTGGTGAGATGACTTTGGAGGATTTTTTGGTTAAGGCCGGTGTAGTTCGGGAAACAACGTGTGCACCGCCACTACCGGTGTCTCACTCTCATCAGCCGCATTACGCGAATAATAACAACAACGTTGCAATGGCTCCTTCTTTTGTTGGTAGGCATGTTGGTGCAGTGAGTAACGTGGTTGCACCGGGTTATCAACAAGTTGTTGGGGAGGCTTCTGGTGGGTATGGTAAGAGGGATCATAATGGTGGTGGGTATCATTGTTTTGGAGGTGGTGGTGGTGGGTATGGGGTGGGGCCCACAATGGGAATGGGTGGGCCTGTGAGTCCGGCTAATTCGTCTGATGGGATAGGGAATGATGGAGGGCAGTTTGGGCTTGACATGGGGGGTTTGAGAGGGAGAAAGAGGGTGGTGGATGGTCCTGTGGAAAAGGTGGTGGAGAGAAGGCAGAGGAGGATGATCAAGAATAGAGAGTCAGCTGCCAGATCTAGAGCCAGAAAACAGGCATACACAGTGGAATTAGAAGCAGAACTAAACCAGTTAAGAGAAGAGAACTCCCAACTGAAACAGGCGCTGGCCGAGCTCGAGAGGGGAAGAAAACAACAGTGTTTTGAGGAAGTGAACGTTAGTGTTAAAACCAAAGCTCAGAAAGCAAAAGAGAAACTGAGAGCTTTGAGAAGGAACATGAGTTGTCCTTTGTGA 1164 0.4897 MVIEEGEMKSQGEVESWLQQEAKKNHHSPLFSSSSYLGRQTSSIYSLTLDEFQHSLCESGKNFGSMNMDEFLSSIWNAEENSQAITNNNVPLSSTLTILRKQPSLPRQPSLSLPAPLCRKTVDEVWSQIQKEQNKNNNISNVLNDNTESAPRQPTFGEMTLEDFLVKAGVVRETTCAPPLPVSHSHQPHYANNNNNVAMAPSFVGRHVGAVSNVVAPGYQQVVGEASGGYGKRDHNGGGYHCFGGGGGGYGVGPTMGMGGPVSPANSSDGIGNDGGQFGLDMGGLRGRKRVVDGPVEKVVERRQRRMIKNRESAARSRARKQAYTVELEAELNQLREENSQLKQALAELERGRKQQCFEEVNVSVKTKAQKAKEKLRALRRNMSCPL* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1612 387 Coils Coil 318 355 - -
Gso19g1612 387 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 300 351 IPR004827 GO:0003700|GO:0006355
Gso19g1612 387 CDD bZIP_plant_BZIP46 302 349 - -
Gso19g1612 387 Gene3D - 300 357 - -
Gso19g1612 387 SUPERFAMILY Leucine zipper domain 302 351 IPR046347 GO:0003700|GO:0006355
Gso19g1612 387 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 4 386 IPR043452 GO:0003700|GO:0045893
Gso19g1612 387 Pfam bZIP transcription factor 302 351 IPR004827 GO:0003700|GO:0006355
Gso19g1612 387 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 305 320 IPR004827 GO:0003700|GO:0006355
Gso19g1612 387 Coils Coil 362 382 - -
Gso19g1612 387 PANTHER ABA RESPONSE ELEMENT-BINDING FACTOR 4 386 IPR029803 GO:0003700|GO:0005634|GO:0009737|GO:0045893
Gso19g1612 387 SMART brlzneu 298 364 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1612 Gso-Chr19 45098500 45103797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1612 1 357 bZIP Transcription Factor Family AT2G36270 49.537 1.85e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso19g1612 bZIP_1 2.4e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1612 K14432 - gmx:100818567 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1612 19 45098500 45103797 Gso10g0619 10 7393472 7399622 PCT