Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1603 ATGATGGATGCGGAATCGGACAAGCGCTCTGCTTCCACCTTTTCTCCTTCTTCATCTTCTTCTTACTCCTCTTCCTCGTGCCTCCGTTTGGATCGGCTCGTCGACTCCGAGGAGATTGAGGCGGCGGAGACTCTGGCGCAGTTGGCAAACTGCAACACTCACTCCTCCGATAAATGGTGCACCAAACAAGACACAACCCGAGTCATGCGCGAGTCGCCGACTCTTCTTCACTCGGATCTCTCTCTTGGGCCTGGGGGCCAAGCTATTGCAGGTCAGCAGCCAGATGAAAAAATATCCACTACATCTGTAGAAACAGAAATGTTTCAGCAGGATGACTGCTCGAGGCACATGAAGGTCGAGCAGGATGCTGATGTATTACCTAACACAAGTTACTCTTTAGTTCGAACCACCAAGTCAAGGCGAAATTTAACCGAGGAAGAAAAAGAAGCAAGGAGGATACGCAGGATATTGGCAAATAGAGAGTCAGCTAGACAGACAATTCGCCGTAGGCAGGCTCTGTGTGAGGAGTTAACTAGAAAAGCTGCCACTTTGGTGGCAGAGAATGAAAACCTAAAGAGGGAGAAAGAATTGGCTTTGAAAGAGTATGAGTCTTTGGAGACTACAAATAAGAACTTGAAGACACAGATAGCCAAGTCAATAAACACTGAAGTGGAGAAAACTCCTGTTGAGCCTGTGTCATCTGTGGCTGAGATAACACCTTCATCCGGTAATGGTCCATGGTTCCTTTATAACCATTTTCCAGTTTCACAAATATTTTGGCCTTCCATCCTTCAGTCTTCTAATCCAGTTCATCTACAAAATACATCATTTAATTCCATCGCCATTCCACCTAATGCTAATGTTCCATGTTCTTCTGAGTCTGAATCACGTCACAAGCAAAATAACCTTATAAATGATAATCGAACTCAAAATCCATTTTACATGTTTCCGTGTCCTTGGTTATTCCCTCTTCCACAGTTTGGAAATGGACAATCATCTCCTTCCAATAGCCTGAAAGATGAACAAGATAATCTTTCTCTATGTAAACCTTGTAGTTCTAGTTCATCTTTGAATACACTGGCAAATGTGGATTATCAAGCAGCTTTACCTATCAAACTTAAAACAGAAGCTTGTGGCTGGACAGAGGCCATACCTATTAATAACCCTGGTTGTGCCACTCCAAGATCATCTTTGGATGGAGGTGAGAAGAAAACAGGATGTTACATTATAGAAAAATATCATGGACCTGCACTCGGTTGTAATGGTCATGCTTCTGCTGTCAAACAAGAACATGATTTTCAATTACTTTCTGCTCCTAACAATAAAGTATCTTCAATAGCTTATATTTCAACTTCTTCACTGGAAAAGAAACAAGAAAAGTTCATTTGCCAGGAGAAAAATCTAGTGGATGCAGTTGCTGCTGCAGAAGCAAGAAAGAGGAGAAAGGAGCTAACGAAGCAGAAAAGCATCCATAACCGCCAGTCCCGGATGCACTGTTGA 1500 0.4293 MMDAESDKRSASTFSPSSSSSYSSSSCLRLDRLVDSEEIEAAETLAQLANCNTHSSDKWCTKQDTTRVMRESPTLLHSDLSLGPGGQAIAGQQPDEKISTTSVETEMFQQDDCSRHMKVEQDADVLPNTSYSLVRTTKSRRNLTEEEKEARRIRRILANRESARQTIRRRQALCEELTRKAATLVAENENLKREKELALKEYESLETTNKNLKTQIAKSINTEVEKTPVEPVSSVAEITPSSGNGPWFLYNHFPVSQIFWPSILQSSNPVHLQNTSFNSIAIPPNANVPCSSESESRHKQNNLINDNRTQNPFYMFPCPWLFPLPQFGNGQSSPSNSLKDEQDNLSLCKPCSSSSSLNTLANVDYQAALPIKLKTEACGWTEAIPINNPGCATPRSSLDGGEKKTGCYIIEKYHGPALGCNGHASAVKQEHDFQLLSAPNNKVSSIAYISTSSLEKKQEKFICQEKNLVDAVAAAEARKRRKELTKQKSIHNRQSRMHC* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1603 499 CDD bZIP_plant_GBF1 152 202 IPR045314 GO:0003700|GO:0006355
Gso19g1603 499 Pfam bZIP transcription factor 147 209 IPR004827 GO:0003700|GO:0006355
Gso19g1603 499 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 494 IPR044827 GO:0003700|GO:0006355|GO:0043565
Gso19g1603 499 MobiDBLite consensus disorder prediction 484 499 - -
Gso19g1603 499 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN 1 494 - -
Gso19g1603 499 MobiDBLite consensus disorder prediction 8 27 - -
Gso19g1603 499 SMART brlzneu 147 211 IPR004827 GO:0003700|GO:0006355
Gso19g1603 499 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 149 212 IPR004827 GO:0003700|GO:0006355
Gso19g1603 499 Coils Coil 160 222 - -
Gso19g1603 499 Coils Coil 474 494 - -
Gso19g1603 499 SUPERFAMILY Leucine zipper domain 151 206 IPR046347 GO:0003700|GO:0006355
Gso19g1603 499 MobiDBLite consensus disorder prediction 1 27 - -
Gso19g1603 499 MobiDBLite consensus disorder prediction 480 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1603 Gso-Chr19 45007872 45012959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1603 138 499 bZIP Transcription Factor Family AT1G19490 36.438 7.44e-51 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso19g1603 bZIP_1 9.4e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1603 - - gmx:100788624 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1603 19 45007872 45012959 Gso3g1624 3 42235228 42240287 GST