Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1601 ATGAAGGTCATCGCCGCCTACTTGCTCGCCGTATTGGGAGGCAATGCAGCCCCTTCCGCTGATGACTTAAGGACCATCCTTGGCTCCGTTGGAGCTGACGCGAATGATGACAACATCAGCAACTTCTTGTCTGAAGTTAAGGGCAAAGACATTGCGGAGCTTATCGCCGCCGGTAGGGAAAAGTTGGCCTCCGTGCCTTCTGGCGGTGGCGCCGCGGTTTCCGTGGCCGCTGCTCCCGGTGGTGGCGCTGCTGCACCGGCTGCCGCCGAATCTAAGAAGGAGGAAAAGGTGGAAGAGAAGGAGGAATCGGATGACGATATGGGATTCAGTCTCTTTGATTAA 342 0.5643 MKVIAAYLLAVLGGNAAPSADDLRTILGSVGADANDDNISNFLSEVKGKDIAELIAAGREKLASVPSGGGAAVSVAAAPGGGAAAPAAAESKKEEKVEEKEESDDDMGFSLFD* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1601 113 Hamap 50S ribosomal protein L12 [rpl12]. 2 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Gso19g1601 113 Pfam 60s Acidic ribosomal protein 18 112 - -
Gso19g1601 113 Gene3D - 1 59 IPR038716 -
Gso19g1601 113 MobiDBLite consensus disorder prediction 81 113 - -
Gso19g1601 113 CDD Ribosomal_P2 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Gso19g1601 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Gso19g1601 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1601 Gso-Chr19 44997730 44998627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1601 1 113 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 67.257 5.26e-32 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1601 K02943 - gmx:100787024 145.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1601 19 44997730 44998627 Gso3g1623 3 42224111 42225041 GST