Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1600 ATGGGTTCATTCTCTGGCACTTGTGAAATAGTTGAAGCAAGGGAGGAAGAGCTAAATACAAGGAAAGCTCCTGGGGTTTATCAGTCCAGTTCTGAGTGTAGCACGTCTGAGAAAAATCAGAAATTTTCGGTGCTGAAATTGGGATACAAGGATGATCTAGATGATGATATCAACAAGCTTTTTGAATCAATTGCTCTTAAATCTTCATCAAGGGATTTGAGCCTTTTCCAAGATGGTACAAGTCCTAGGCTGAAAAGTGCATTAAAAAAACCAATTACAATGGGTATTCCACGGTCCCCAAGAGTTGGGACTTCTGAGCCCGCTAATTTGAAGCAAGCATTAAGAGACCTTTGTATATCTAAAGCATCCGAAATGGCTGCTATGAAACGATTATCAAAGTCAACAACAGCTTCTCCAAGATTATCTGAAGTTGGGAAGATACAGACATTGTACAATTCAGTTGTAGCTGAAACCAGTCGATCTGGGTCTTCCTTTGTTGAGAGCAATGGGCGTCAAATTGAAATATCTCTAGTGCCAGAAAAAGGCAAATCCCTTTCCTTGGAGAAAACCTCTCAATCTTCCCAAATTGCATTGTTGAGCCGAAACATTCATTCTTCTCGGGAAATTGCTGTTGCAACTACTAAATATGATGCTGGGACTTCATTGATACAAAGTGATTTGGCAGGCTCGTCAAGTAAAGTTGGGATTCAATCACAACGAGTGGTACCTGTTGAAACAGAAGAACAAGCATCTGCCTCTTCTCCCTCTCTTTATAATACATCTGGATGCAAATCAGAGGTGCCCAAAAATGCTTCTTCCCCTAAAAAGTTGGGAAATAAAACATCTGTATCAAATACTGGGAAGAAAGGTAGGTTGCAAACAGTATCTTCATCTAATGCTGTAAATGGCAACAGAGTTAACAAACCGCCACGCCATGCCCCCTGGACTGTTAAATCGGTCATCAAGAACAAGAATCTGAGTAAGAAGAAACAAAAGGAGGATTCATGCTCTACTTTATGTGGTCCTACGCCCAATGAAGTTAATAAGCCTGTTCCTGGTACACCTCGGCTAATTTGTGAGAGATGTAGGTGTGCTTTGGAAAATACTAGTGAAGAAAAAAACCAAGATATTGTGGCATTAGACTCTACCAGTCCTGAAAACGGAGTAAACTTGAGTAATGTGCACTCTGGTTCAAATAAACCTGGTTTGGTGTCAAGTAGTGTTAATAAAAGCAAAACAGTTGCAAAAGTGAAGAACACCAAGTTGAAAGAGCAAATTGAATTTTCACAAAGTTCAAAGAGTAGTCAAGGTGAGTACAGCAGTAGTACAAGTACTAGTGATGAGAGCAATGTGAGTGGTTCAAGTCGTAGCACTAGGCCTCACATGTCAAAGGATGTCAGGTGGGCAGCCATACGACATGCTCAAGTGCAGCATGGAGTCTTGGGCTTGAGACACTTCAATCTTTTAAAGAAACTTGGTTGTGGAGACATTGGCACTGTATATCTTGCGGAACTAATTGGCACTAGCTGCTTGTTTGCTATTAAGGTCATGGACAATGAATTTTTAGAAAGAAGAAAGAAGATGCCTAGGGCTCAAACTGAAAGAGAAATATTAAGGATCCTGGATCATCCTTTTCTTCCCACAATGTATGCACAATTTACATCAGATAATCTATCGTGTCTGGTCATGGAGTATTGTCCAGGTGGAGATCTTCATGTTCTACGGCAGAAGCAGCTTGGTAGATATTTCTCGGAGCCAGCAGCAAGGTTTTATGTTGCTGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGAGTTGTTTACCGTGATTTGAAACCCGAAAACATTCTTGTTCGGGAAGATGGCCACATTATGCTCACAGATTTTGATCTGTCCCTGAGGTGTGCTGTTAACCCAATGCTTCTGAAATCATCTGATGTTGACCCTGCAAAAATCTCTGGTTTAAGTGCACAAGCAAGTTGCATTGAGCCATTCTGCATTGAACCATCTTGTCAAGTTCCATGCTTCAGCCCAAGATTGCTACCCACCGCTGCAAAAGCAAGGAAACTAAAAGTTGATCTTGCAGCCCAGGTCAGATCATTGCCACAGCTTGTGGCCGAGCCCACAGATGCAAGATCAAACTCATTTGTTGGCACACATGAATACTTGGCTCCTGAGATCATCAAAGAAGAGGGACATGGAGCTGCAGTTGACTGGTGGACATTTGGAGTTTTTCTCTACGAACTTTTGTACGGCAGAACACCCTTTAAAGGTTCAAACAATGAAGAAACATTGGCCAACGTAGTGTTGCTGGGTCTTCGATTCCCCGAGCACCCAAATGTTAGTTTCCAAGCAAAGGATCTGATAAGAGGGTTGTTGGTTAAAGAGCCTGAAAACCGTTTGGGTTCAGAGAAAGGGGCTGCCGAGATTAAACAGCATCCCTTCTTCGAGGGCCTTAACTGGGCCTTAATTCGCTGCGCTATGCCTCCAGAACTTCCAGACTTCTATGATTTTGGAGTTTCAGACATGATGAACTCGCAGTGCAAGGGTGCTAAGTACTTAGAGTGTAAAGTAGGAGAGCATGTAGAATTCGAGTTGTTTTGA 2607 0.4223 MGSFSGTCEIVEAREEELNTRKAPGVYQSSSECSTSEKNQKFSVLKLGYKDDLDDDINKLFESIALKSSSRDLSLFQDGTSPRLKSALKKPITMGIPRSPRVGTSEPANLKQALRDLCISKASEMAAMKRLSKSTTASPRLSEVGKIQTLYNSVVAETSRSGSSFVESNGRQIEISLVPEKGKSLSLEKTSQSSQIALLSRNIHSSREIAVATTKYDAGTSLIQSDLAGSSSKVGIQSQRVVPVETEEQASASSPSLYNTSGCKSEVPKNASSPKKLGNKTSVSNTGKKGRLQTVSSSNAVNGNRVNKPPRHAPWTVKSVIKNKNLSKKKQKEDSCSTLCGPTPNEVNKPVPGTPRLICERCRCALENTSEEKNQDIVALDSTSPENGVNLSNVHSGSNKPGLVSSSVNKSKTVAKVKNTKLKEQIEFSQSSKSSQGEYSSSTSTSDESNVSGSSRSTRPHMSKDVRWAAIRHAQVQHGVLGLRHFNLLKKLGCGDIGTVYLAELIGTSCLFAIKVMDNEFLERRKKMPRAQTEREILRILDHPFLPTMYAQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRYFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCAVNPMLLKSSDVDPAKISGLSAQASCIEPFCIEPSCQVPCFSPRLLPTAAKARKLKVDLAAQVRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKEEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLLGLRFPEHPNVSFQAKDLIRGLLVKEPENRLGSEKGAAEIKQHPFFEGLNWALIRCAMPPELPDFYDFGVSDMMNSQCKGAKYLECKVGEHVEFELF* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1600 868 Gene3D Phosphorylase Kinase; domain 1 484 565 - -
Gso19g1600 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Gso19g1600 868 SMART serkin_6 486 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1600 868 SUPERFAMILY Protein kinase-like (PK-like) 460 843 IPR011009 -
Gso19g1600 868 ProSiteProfiles Protein kinase domain profile. 486 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1600 868 MobiDBLite consensus disorder prediction 426 463 - -
Gso19g1600 868 CDD STKc_phototropin_like 484 835 - -
Gso19g1600 868 Pfam Protein kinase domain 714 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1600 868 Pfam Protein kinase domain 487 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1600 868 Gene3D Transferase(Phosphotransferase) domain 1 566 634 - -
Gso19g1600 868 MobiDBLite consensus disorder prediction 426 459 - -
Gso19g1600 868 Gene3D Transferase(Phosphotransferase) domain 1 710 826 - -
Gso19g1600 868 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 868 - -
Gso19g1600 868 MobiDBLite consensus disorder prediction 245 314 - -
Gso19g1600 868 MobiDBLite consensus disorder prediction 373 407 - -
Gso19g1600 868 MobiDBLite consensus disorder prediction 245 305 - -
Gso19g1600 868 PANTHER FLIPPASE KINASE 1-RELATED 1 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1600 Gso-Chr19 44981730 44985286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1600 1 868 AGC Kinase Gene Family AT3G52890 51.402 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gso19g1600 Pkinase 2.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1600 - K08286 gmx:100815910 1642.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1600 19 44981730 44985286 Gso3g1622 3 42209658 42213236 GST
Gso19g1600 19 44981730 44985286 Gso10g0585 10 6779134 6784403 PCT
Gso10g0585 10 6779134 6784403 Gso19g1600 19 44981730 44985286 PCT