Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1597 ATGGACTTCCATCTGAAGGAATGGAGAAACCAGCATGAGTCAGAGGAACAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCATCAACAGCCATCTGCCACTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAGCAGCAAAGTCAGCACCCTGTCAGATTCAACATTAGCAGCTGAAACTGAAACAATGACCACTACAACCACTAACAGATTATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTGGCTGGTGCTGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCATTCCCCTCACTATTTCCTCCATCACCCTCTCCAACATTACCAACCTGCTGCTTTGTTGCAATCAGGGTATTGGGGTAGAGGAGCGATGGATCCGGAGCCAGGGCGGTGCCGGAGAACCGACGGCAAGAAATGGCGGTGCTCGAGGGACGTGGTGGCTGGGCAAAAGTACTGTGAGCGCCACATGCATCGTGGAAGAAACCGTTCAAGAAAGCCTGTGGAACTACCCACACCAACTAGTGCTAATAATTGTGATGGTGGATCTCTAGGACTAGGTGCTTCTTCATCTTCCATTTCTTCACCACCCCTAGCTTCTGCTTCACTCAAATCCCCATTTGATCTTCTTCGTCTTAATGAACGTTCCTCTGGGACCAAGAATGAAGACGAAGACCATGTGGGTGGGGATGGCAGATCAGGTGGAGGGGGTGGCCATATGCTGAGGCATTTCTTCGATGATTGGCCACGATCACTGCAAGACTCTGACAACGTTGAAAACAATGCTGCTGGCCCTAGCCTCTCTATTTCAATGCCCGGAAATGCTGCTGCTGCTTCCTCGGATGTGTCATTGAAATTGTCCACGGGCTATGGAGAGGACCCAGGCCCAAGAAATGAGAATGTGGGCCTCGTGGCAGAGCAGCTGCAGTTGAATTGGGCCGGAGGATGGGCCTCGTCTAATCAAGTGGCTTCCATGGGAGGACCACTGGCCGAGGCACTCAGATCATCTATTTCAACTTCATCTCCCACTAGTGTTTTGCATCACTTGCCTCGTGGTTCTGGATCTGAGACCAGCATTATTAGCACCTGA 1167 0.5021 MDFHLKEWRNQHESEEQQHSTKMPKLLPESHHQQPSATALPLFVPEPNSSSKVSTLSDSTLAAETETMTTTTTNRLFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPHYFLHHPLQHYQPAALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTSANNCDGGSLGLGASSSSISSPPLASASLKSPFDLLRLNERSSGTKNEDEDHVGGDGRSGGGGGHMLRHFFDDWPRSLQDSDNVENNAAGPSLSISMPGNAAAASSDVSLKLSTGYGEDPGPRNENVGLVAEQLQLNWAGGWASSNQVASMGGPLAEALRSSISTSSPTSVLHHLPRGSGSETSIIST* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1597 388 Pfam WRC 153 195 IPR014977 -
Gso19g1597 388 PANTHER GROWTH-REGULATING FACTOR 3 8 388 - -
Gso19g1597 388 ProSiteProfiles WRC domain profile. 152 196 IPR014977 -
Gso19g1597 388 Pfam QLQ 84 116 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso19g1597 388 ProSiteProfiles QLQ domain profile. 83 118 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso19g1597 388 PANTHER - 8 388 IPR031137 GO:0005634|GO:0006351|GO:0032502
Gso19g1597 388 MobiDBLite consensus disorder prediction 242 256 - -
Gso19g1597 388 SMART QLQ_2 82 118 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gso19g1597 388 MobiDBLite consensus disorder prediction 242 270 - -
Gso19g1597 388 MobiDBLite consensus disorder prediction 1 63 - -
Gso19g1597 388 MobiDBLite consensus disorder prediction 366 388 - -
Gso19g1597 388 MobiDBLite consensus disorder prediction 1 26 - -
Gso19g1597 388 MobiDBLite consensus disorder prediction 31 63 - -
Gso19g1597 388 MobiDBLite consensus disorder prediction 194 226 - -
Gso19g1597 388 MobiDBLite consensus disorder prediction 182 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1597 Gso-Chr19 44939378 44942932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1597 1 375 GRF Transcription Factor Family AT3G52910 48.628 7.86e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gso19g1597 WRC 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1597 - - gmx:100814842 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1597 19 44939378 44942932 Gso3g1617 3 42136084 42139547 GST
Gso19g1597 19 44939378 44942932 Gso10g0584 10 6769498 6772799 PCT
Gso10g0584 10 6769498 6772799 Gso19g1597 19 44939378 44942932 PCT