Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1594 ATGCGTTCCAGCAACGGTACATCAAGCAGCAGGGCCTCCAACGGTAACACAGGGCGCCACCCTGTTTACCGTGGAGTGAGGCGTAGGAGTAGTGGTAAATGGGTTTCTGAAATCCGTGAGCCCAAAAAACCTAACAGGATTTGGTTAGGGACATTTGCCACCCCTGAAATGGCTGCTATTGCCTATGACGTGGCAGCGCTTGCTCTTAAGGGTAAGGATGCTGAGCTCAACTTCCCTAACTCGGCTTCCTCCCTCCCTATCCCTGCATCATCTGCAGCTCACGACATTCAGATGGCTGCAGCACTAGCTGCAACCGCTGTCGAAGCAGCGAATGATGCACTGGAAGGAAGCCAAGGAGGAAATGTTTCGGTTTCATTGGCGGAAGAGTTTTCAGGGGGAAACTTAAATCACTTTGTGGATGAGGACTTGATCTTTGACATGCCGAATATTCTGGTCAATATGGCTGAAGGAATGCTACTCAGCCCTCCTCGTTTTGATAATTTTGCTGCTACCGACTATGAATACATGGATGAAGATCCTAACCTCTGGGGGTTCCCTAATTACTAG 567 0.4956 MRSSNGTSSSRASNGNTGRHPVYRGVRRRSSGKWVSEIREPKKPNRIWLGTFATPEMAAIAYDVAALALKGKDAELNFPNSASSLPIPASSAAHDIQMAAALAATAVEAANDALEGSQGGNVSVSLAEEFSGGNLNHFVDEDLIFDMPNILVNMAEGMLLSPPRFDNFAATDYEYMDEDPNLWGFPNY* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1594 188 Pfam AP2 domain 21 71 IPR001471 GO:0003700|GO:0006355
Gso19g1594 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 186 - -
Gso19g1594 188 MobiDBLite consensus disorder prediction 1 31 - -
Gso19g1594 188 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Gso19g1594 188 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 4 186 - -
Gso19g1594 188 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Gso19g1594 188 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Gso19g1594 188 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Gso19g1594 188 MobiDBLite consensus disorder prediction 1 17 - -
Gso19g1594 188 CDD AP2 23 81 IPR001471 GO:0003700|GO:0006355
Gso19g1594 188 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Gso19g1594 188 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1594 Gso-Chr19 44871632 44872811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1594 12 186 AP2-EREBP Transcription Factor Family AT2G36450 62.637 3.05e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso19g1594 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1594 - - gmx:100813781 347.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1594 19 44871632 44872811 Gso3g1613 3 42066442 42067613 GST
Gso19g1594 19 44871632 44872811 Gso10g0580 10 6673954 6675271 PCT
Gso10g0582 10 6730600 6731597 Gso19g1594 19 44871632 44872811 PCT