Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1593 ATGGAAATGGAGGACCATCATCAGTATGGCATCGCTGATCTGAGGCAGCTGGTGAACGGCCCACGGCCCACCCATTTCCCCGCCATGCCTCCGCAGCCCAAGGCGGAGCTGTTCCCAGGCGGCGGCGGCGGCCACCCAAACCTGCAGGCGGCGACACAACAACACTACGAGATGATGATGTTTGGTCGTCAAGTGGCGGACATAATACCTCGTTGTCTTCACGACTTCGCCCCCACTGATTCCGCCACCAACATCGCCGTTGCCACTCCCACCACCACCACTAGCGCCTCTACTCCTCCGCTTAGTTGCTTAGAGGCCGAGACCGCAGGATGCATCGGTGGAGACGCCTCCACTGGAAGATGGCCCAGACAAGAGACTCTCACTCTCCTTGAGATCAGATCTCGCCTCGACTCTAAATTCAAAGAGGCTAATCAAAAAGGCCCCCTATGGGTTGAAGTTTCTAGGATCATGTCTGAAGAACATGGATATCAAAGGAGTGGGAAGAAGTGCAGGGAGAAGTTCGAGAACCTATACAAATATTACAAGAAGACAAAGGAAGGGAAAGCAGGAAGACAAGATGGGAAGCATTACAGGTTCTTTCGTCAACTTGAAGCCTTATATGGTGAAAACAGTAACCAAGCCTCGGTGCCAGAAACCAATTTTGGCAGTGGTAGCCTTCGTTTCCACACAAGCAGCCACAACAACCCTTCTCAAACAAATCAAGAAATGTTTCAGTCTCAGAAGCATTGTGACAGCCTCAGCCTCACCAACTCCACTGATTTGGACACGTCATCATCGGACGACAATGATCAGAATAGCACTGGCGGGGGACTCAAGGACAATGACTCCATGGAGAAGAGGAGAAAGAGGGTGAGTGGAAGAAGTTGGAAGGTGAAGATAAAGGACTTCATTGACTCACAGATGAGGAAGCTGGTGGAGAAGCAAGAGGAGTGGTTGGATAAACTCACAAAGACACTGGAACAGAAGGAGAAGGAGAGGGTGTTAAGAGAAGAAGAGTGGAGGAGACAAGAAGCTGCAAGGTTGGAGAGGGAACACAAATTTTGGGCCAAAGAGAGAGCATGGATTGAAGCAAGGGATGCTGCTCTAATGGAGGCTTTGCACAAATTAACCGGAAACGGGATCATAAAGAGTACTCATTCTCCTGATGGTTTGATGGTAACTGGAATTCAGAACCACAGTGAAAACCAGAATGAAGATGGGAGTGAAATACTAAATAGCACTACTGCCAGAGGTGCTGAAAGCTGGACAGAATCTGAGATTGCAAGGCTTCAACAGTTGAGAGCTGAGATGGAGACAAGGTATATGCAAAGTGGGTGTTCAGAAGAGGTTATGTGGGAGGAAATAGCTACCAAAATGGCTTGTTTTGGTTACGAAAGGAGTGCTGTGGTCTTCAAAGAGAAATGGGAGAGTATAAGTAACTATGCAAGGAGTGTCAAGGATGGAAGCAAGAAGCGCAAGGAAGACTCAAGAAGTTGTTTTTACTTCGATAACAGTGACCAATCTTCTCTGTATAACCAAGGAGGTGCCTATTGTGATATCAACGATCAAAGGCACAAGACTGGGAGGCTGCAAACAAATGATGGCTCTTCACCTTCCAATTCAAATGTTGGAAATACAGTTGCGGTTGATAACTGCTTTCCCTTCTTGATGACTGAGAGTGGAAATTTGTGGGAGAACTATAGCTTAAAGGTTAATAAAGCAAGCCAAAACCAGTGA 1737 0.4767 MEMEDHHQYGIADLRQLVNGPRPTHFPAMPPQPKAELFPGGGGGHPNLQAATQQHYEMMMFGRQVADIIPRCLHDFAPTDSATNIAVATPTTTTSASTPPLSCLEAETAGCIGGDASTGRWPRQETLTLLEIRSRLDSKFKEANQKGPLWVEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGENSNQASVPETNFGSGSLRFHTSSHNNPSQTNQEMFQSQKHCDSLSLTNSTDLDTSSSDDNDQNSTGGGLKDNDSMEKRRKRVSGRSWKVKIKDFIDSQMRKLVEKQEEWLDKLTKTLEQKEKERVLREEEWRRQEAARLEREHKFWAKERAWIEARDAALMEALHKLTGNGIIKSTHSPDGLMVTGIQNHSENQNEDGSEILNSTTARGAESWTESEIARLQQLRAEMETRYMQSGCSEEVMWEEIATKMACFGYERSAVVFKEKWESISNYARSVKDGSKKRKEDSRSCFYFDNSDQSSLYNQGGAYCDINDQRHKTGRLQTNDGSSPSNSNVGNTVAVDNCFPFLMTESGNLWENYSLKVNKASQNQ* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1593 578 CDD GT1 422 486 - -
Gso19g1593 578 Coils Coil 312 339 - -
Gso19g1593 578 MobiDBLite consensus disorder prediction 211 291 - -
Gso19g1593 578 Gene3D - 121 183 - -
Gso19g1593 578 Gene3D - 422 483 - -
Gso19g1593 578 SMART sant 418 481 IPR001005 -
Gso19g1593 578 SMART sant 117 180 IPR001005 -
Gso19g1593 578 CDD GT1 120 185 - -
Gso19g1593 578 Pfam Myb/SANT-like DNA-binding domain 120 206 IPR044822 -
Gso19g1593 578 Pfam Myb/SANT-like DNA-binding domain 421 506 IPR044822 -
Gso19g1593 578 ProSiteProfiles Myb-like domain profile. 421 479 IPR001005 -
Gso19g1593 578 PANTHER - 18 569 - -
Gso19g1593 578 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 18 569 - -
Gso19g1593 578 MobiDBLite consensus disorder prediction 211 279 - -
Gso19g1593 578 ProSiteProfiles Myb-like domain profile. 113 178 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1593 Gso-Chr19 44852449 44855914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1593 1 573 Trihelix Transcription Factor Family AT5G03680 44.695 5.51e-142 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso19g1593 Myb_DNA-bind_4 6.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1593 - - gmx:100813245 1115.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1593 19 44852449 44855914 Gso3g1612 3 42049035 42052560 GST
Gso19g1593 19 44852449 44855914 Gso2g1721 2 40817606 40818626 PCT
Gso19g1593 19 44852449 44855914 Gso10g0579 10 6632071 6635690 PCT
Gso2g1721 2 40817606 40818626 Gso19g1593 19 44852449 44855914 PCT
Gso10g0579 10 6632071 6635690 Gso19g1593 19 44852449 44855914 PCT