LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso19g1590	ATGAGCATGGAGAGATCGTTGGACAGATCGAGAGAACCTGGTCCCAAGAAGCCTCGATTGATCGAGGAACTCAACGCCCGACAGTTACCTCAACGCCCTACGGCAGTTACTACGTTGCCGTCTACGAGGTTTCGAGCATATGGCAGAGACTCCGAAATCAGCGATTTGGGTCGTGGCGGTGGCGGCGGGTACCAGCCGCAGCCTCCGCCGCACCAAGAGCTTGTGACTCAGTACAAGACTGCGCTTGCTGAGCTCACTTTCAATTCGAAGCCGATAATTACCAACTTGACTATTATTGCCGGAGAGAACCTTTCTGCTGCCAAGGCAATTGCTGCTGCTGTTTATGATAATATTCTGGAGGTTCCTAGTGATCAAAAACTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATCGGACGGGATTATATAAAATATTTTGCTTACAGACTACCTGAGGTATTCTGCAAGGCTTACAAACAGGTTGATCCTTGTGTTCATTCAAGTATGCAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTCCCTTCAGATGATTGAGAAGGAACTTGGCTTTGCACCTGCAGTCAATAGTTCAGCTTCAGTATCTGCTACAGACAGAAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCAAGTAGGAGTAAAGGGGTAGTTAATGATATGACTGGAGCTGTTTTAAACTCAAATGAGGATTCGGAGAGGCCAGATAGAGCTTTGAGTGCTGCACGACCATGGCTGGATCCTAGGATTAACATGCTTAATAATCAGCACACACATAGAGATGTATTTAATGATTCTGTTCCTGAAAAGAGCATGGATGGGTCATCATACGGAGGCAGTGAATATAGTTCTGTCATTTCAAGTAATTTGGTCTCAGGGGCTGGAAGAACTGGAAGTAAGCTCATTGATTTAGGACATGACAAAACATGGTTCAAAACAGATGGTGGTGATGCAGATACTACATCTGGGCAAAGAAATGGTTTCAATCTCAAGCGTAGTTATTCAAATCGTGAAGCACCAAAGCTCACGAATTTGGATGCACATCGTCAGCCAAGACAAAGCACAACTGACATACGGAACAATTTGATGTCAGGTAACTGGAAAACTTCTGAAGAAGAGGAGTTCATGTGGGGTGAGATGAACATTGGTTTGACTGATCATGGAGCCAATGTATCAAGCAATTTGAGCACAGACACATGGATGGCAGATGATGAGAATTTGGAAGGTGAAGATCACCTCCAAATCACACGCCCTTTTGGAGCAAAGGTCGATAGAGAAATATCCACTGCTAAGAAACAACCACCTGGTTTTGGGGGTCATCCACCGTCATCCTGGCAATTGCAGAAGCACCACTCAATTGATAAGTTGAATCTAAAGCCAGGTTACTCAGAAGGATTTGTGTCAACTCTTAGTGGATTACCAGCCAACCCAAGTTCTTTGGCTGTCAAGAAGGGGAACCAATCCTTTACATCGAATGCAGTAGTAGGAATGGCCAAATTTGTGGGACAACAATTTGATTCTGGGGAAACTGAATCCCCTTCTGGGCAGTCACCTTTGCGGCAACAGTCTCCATCACTTCCAGGAGCAGTACACCATACTCATTCAATGCAAAATTTTGCTGACCAAGAATTGCCCCAGAATCTCAAAACCTCTCGATTTTTGGGAGGTCCGATAAGTCAGCATATTAGAGATCGCTCACCTACCGGTCATCCAATTGTTCAGGTTGGTAACTTGCGAAGATCACAGGAAAGGGACATGCACGGCCCATTATCTTCCATGACTTCTTTTCGACCAAAGCTTCAGCAAAAGCAGCTGAACCCATCTCAGACTGAAGTTACTGCTAAAACTAAGCTGCCCCAGTCTAAAGTTTCTTTAACCAGAGAAACTTCAGAACAGTTGAGCACAAATAATTTGTCAGCTGTACCTGTCAAGAGTGGAATCATCCCCAAGAAATCAATTTCCAGTAATCTGGATTCAAGGGAGGATCCATCTCAGACTGGGGTTCAACCTACTCAGTCTGGTAGGCCTACCACATTAATTTCTTCAGGGTCTGCTGTGGCATCACCATCTTCATTAGATCCTCTGCATAATGATTCATCTACTCTGCCAAAAAAACCTCAAGGAAAGGCTGGACAACCACCACAAAGGCTTTCTACTCAACCACCTGCTTCCTCTAGTGTTAGCAGTTCCTCAGCTCCAACCTTAAATGCTGCCAAAAATAATAAATTAAATCCAATTGCAAACCTTTTAAGCTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACAGAATCACCAACTACGGTACCAAGTGAAGCGCCGAAGGGATCCAAAGATCAAACTGAAATAATTACCACCAGTTGTTCTTTACCAGTTACATCAATTTCTGGTTCTGCAGCTATCCCAGTATCATCTTCCGGAGATAAGGTAGATGCTGCTACAAAAATCTCTCATGCCTCACCTCAATCAACTAGCACGGAAATCAGAAATCTCATCGGCTTTGATTTTAGACCTAATGTAATTCGAGAATTCCACCCATCAGTAATTAGGGAATTATGGGATGATTTCCCTCATAATTGCAAAGTTTGTGGTATTAAGCTTAAACAAGAACTGTTTAATAGACACTTGGAGTGGCATGCCGCAAGAGAACATGGTCCAATTAAGGCATCAAGAAGTTGGTATGCTAAGTCAATTGATTGGATTGCTGGCAGGACAGAATATTCATCTGAGTCCGAGTTTACTGACTCTGTTGATTTACAAGACAAAAAAATAGACAGCAGTCAATTGGATACGATGGTTCTAGCAGATGAAAACCAGTGTCTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGTGTACTGTCATGACAGGAACGAGTGGATGTTCAAAGGGGCCGTTTACATGAACTTTTCAGATGTCAATTGTGAGATGGAAAGTAGAAATGTGGGTCCCATCATTCATGCCAAATGCTTATCAGAGAACTCAGTGATCACCAATTCGGATAATGATTAA	3093	0.4332	MSMERSLDRSREPGPKKPRLIEELNARQLPQRPTAVTTLPSTRFRAYGRDSEISDLGRGGGGGYQPQPPPHQELVTQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAAAVYDNILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAYRLPEVFCKAYKQVDPCVHSSMQHLFGTWKGVFPPQSLQMIEKELGFAPAVNSSASVSATDRSDLQSQRPPHSIHVNPKYLERQRLQQSSRSKGVVNDMTGAVLNSNEDSERPDRALSAARPWLDPRINMLNNQHTHRDVFNDSVPEKSMDGSSYGGSEYSSVISSNLVSGAGRTGSKLIDLGHDKTWFKTDGGDADTTSGQRNGFNLKRSYSNREAPKLTNLDAHRQPRQSTTDIRNNLMSGNWKTSEEEEFMWGEMNIGLTDHGANVSSNLSTDTWMADDENLEGEDHLQITRPFGAKVDREISTAKKQPPGFGGHPPSSWQLQKHHSIDKLNLKPGYSEGFVSTLSGLPANPSSLAVKKGNQSFTSNAVVGMAKFVGQQFDSGETESPSGQSPLRQQSPSLPGAVHHTHSMQNFADQELPQNLKTSRFLGGPISQHIRDRSPTGHPIVQVGNLRRSQERDMHGPLSSMTSFRPKLQQKQLNPSQTEVTAKTKLPQSKVSLTRETSEQLSTNNLSAVPVKSGIIPKKSISSNLDSREDPSQTGVQPTQSGRPTTLISSGSAVASPSSLDPLHNDSSTLPKKPQGKAGQPPQRLSTQPPASSSVSSSSAPTLNAAKNNKLNPIANLLSSLVAKGLISAETESPTTVPSEAPKGSKDQTEIITTSCSLPVTSISGSAAIPVSSSGDKVDAATKISHASPQSTSTEIRNLIGFDFRPNVIREFHPSVIRELWDDFPHNCKVCGIKLKQELFNRHLEWHAAREHGPIKASRSWYAKSIDWIAGRTEYSSESEFTDSVDLQDKKIDSSQLDTMVLADENQCLCVLCGELFEDVYCHDRNEWMFKGAVYMNFSDVNCEMESRNVGPIIHAKCLSENSVITNSDND*	1031

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso19g1590	1030	PANTHER	PRE-MRNA CLEAVAGE COMPLEX II	4	1024	IPR045154	GO:0000993\|GO:0003729\|GO:0006369\|GO:0006378\|GO:0006379
	Gso19g1590	1030	SMART	558neu5	73	195	IPR006569	-
	Gso19g1590	1030	PANTHER	RNA POLYMERASE II-BINDING DOMAIN PROTEIN	4	1024	-	-
	Gso19g1590	1030	MobiDBLite	consensus disorder prediction	678	765	-	-
	Gso19g1590	1030	CDD	CID_Pcf11	75	187	-	-
	Gso19g1590	1030	Gene3D	-	67	195	IPR008942	-
	Gso19g1590	1030	MobiDBLite	consensus disorder prediction	578	664	-	-
	Gso19g1590	1030	Pfam	CID domain	79	188	IPR006569	-
	Gso19g1590	1030	MobiDBLite	consensus disorder prediction	1	23	-	-
	Gso19g1590	1030	ProSiteProfiles	CID domain profile.	70	198	IPR006569	-
	Gso19g1590	1030	SUPERFAMILY	ENTH/VHS domain	70	198	IPR008942	-
	Gso19g1590	1030	MobiDBLite	consensus disorder prediction	532	558	-	-
	Gso19g1590	1030	MobiDBLite	consensus disorder prediction	621	664	-	-
	Gso19g1590	1030	MobiDBLite	consensus disorder prediction	1	71	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso19g1590	Gso-Chr19	44813742	44820543	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso19g1590	28	232	C2H2 Transcription Factor Family	AT4G04885	53.140	1.03e-53	200

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso19g1590	19	44813742	44820543	Gso3g1608	3	42008096	42014243	GST
	Gso19g1590	19	44813742	44820543	Gso10g0574	10	6557978	6565355	PCT
	Gso10g0574	10	6557978	6565355	Gso19g1590	19	44813742	44820543	PCT