Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1589 ATGAACATGGAGAGATCGTTGGACAGATCGAGAGAACCCGGTCCCAAGAAGCCTCGATTAATCGAGGAACTCAGCGCCCGACAATTACCTCTACGCCCTGCGGCAGTTACTACGTTGCCGTCTACGAGGTTCCGAGCATATGACAGAGACTCCGGCGGCGGCGGAGGGTATCAGCCGCAGCCTCCGCCGCACCAAGAGCTTGTGATTCAGTACAAGACCGCGCTTGCTGAGCTCACTTTCAATTCGAAGCCAATAATTACCAACTTGACTATTATTGCTGGAGAGAACTTGTCTGCTGCCAAGGCAATTGCTGCCACCGTTTGTGCTAATATTATAGAGGTTCCGAGTGATCAAAAACTGCCATCTCTTTATCTCTTAGACAGTATTGTGAAGAACATTGGACGGGATTATATAAAATATTTTGCTTCCAGACTACCTGAGGTATTCTGCAAGGCTTACAGACAGGTTGATCCTTGTGTTCATTCAAGTATGAAACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGTCCCTTCAGATGATTGAGAAGGAACTTGGCTTTGCACCTGCAGTCAATAGTTCAGCTTCAGTATCTGCTACAGTCAGGAGTGATTTGCAGTCACAACGCCCACCTCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCAAGTAGGAGTAAAGGAGTAGTTAATGATATGACTGAAGCTGTTTTAAACTCAAATGAGGATTTGGAGAGGCCAGATAGAGCTTTGAGTGCTGCTCGACCATGGCTGGATCCTAGGATTAACATGCTTTGCTGTATATTGCAGAATAATCAGCACACACATAGAGATGCATTTAATGATTCTGTTCCTGAAAAGAGCATGGATGGGTCATCATACGGAGGCAGTGAATATAGTTCTGTCATTTCAAGTAATTTGGGTTCAGGGGCTGGAAGAACTGGAAGTAAGCTCATTGATTTAGGACATGACAGAACATGGTTCAAAACAGATGGTGGTGATGCAGATACTACATCTGGGCAAAGAAATGGTTTCAATCTGAAGCATAGTTTTTCTAATCATGAAGCACCAAAGTCCATGAATTTGGATGCACATTGTCAGCCGAGACAAAGCATAACTAACAAACAGAACGATGTGATGTCATGTAACTGGAAAACTTCTGAAGAAGAGGAGTTCATGTGGGATGAGATTGACAATGGTTTGATTGATCATGGACCCAATGTATCAAAAACTTTGAGCACGGACACATGGATGGCAGATGTTGAAAATTTGGAAGGTGAAGATCACCTCCAAATTACACGCCCTTTTGGGGCAAAGGTCAATAGAGAAATATCCACTGTTAAGAATCAATTACCTGGTTTGGGGGGCCATCCACCATCATCGTGGCAATTGCAGAATCTAAAGCCAGGCTACTCAGAAGGATTTGTGTCCTCTCATAGTGCCTTACCAGCCAATGCAAGTTCTTTGACTGTCAAGAAGGGGAACCAATCCTTTATGTCGAATTCGGTAGTAGGAAGGGTCAAATTTGTGGGACAACAATTTGATTCTGGGGAAACTGAATCCCCTTCTTGGCAGTCACCTTTGCGGCAACAGTCTCCATCACTGCCAGGAACAGTACACCACCCTCATTCAATGCAAAATTTTGCTGACCAAGAATTACCCCAGAATCTCAAAACCTCTCAATTTTTGGGAGGTCCGATAACTCAGCATATTAGAGATCACTCCCTTACGCTACGCCCGATTGTTCAGGTTGGTAACTTGCGAAGATCACAGGAAAAGGACATGCAGGGCCCGTTATCTTCCATGACTTCTTTTCGACCAAAGCTTCAGCAAAAGCAGCTGGACCCGTCTCAGTCTAAAGTTTCTTTAACCAGAGAAACTTCAGCACAGTTGACCACAAATAATTTGTCAGCTGCACCTGTCAAGAGTGGAGTCATCCCCAAGAAATCAATTACCTGTGATCCGGATCCAAGGAAGCATCCATCTCAGACTGGGGTTCAGCCTACTCAGTCTGGTAGACCTACCACATTAGATCCTCTGCATAATGACTCATCTACACTGCCAAAAAACACTCAAGGAAAGGCTGGACAACCACCACAAAGGCTTTCTACTCAACCACCCGCTTCCTCTAACATTAGCAGTTCCTCAGCTCCGACCTTAAATACTGCCAAAAATAATAAACTAAATCCAATTTCAAACCTTTTAAGCTCATTGGTTGCAAAGGGTTTGATATCTGCAGAAACAGAATCACCAACTATGGTACCAAGTGAGGTTCCGAAGGGATCCAAAGATCAAACTGAAATAATTACCACCAGTTGTTCTTTACCAGTTACATCAATTTCTGGTTCTGCAGCTGTCCCAGTATCGTCTTCCGGAGATGAGGTAGATTCTGCTACAAAAACCTCTCTCGCCTCACCTCAATCAACTAGCACGGAAATCAGAAATCTTGTTGGCTTTGATTTTAGACCTAATGTAATTCGAGAATTCCACCCATCAGTAATTAGGGAATTATGGGATGATTTCCCTCATAATTGCAAAGTTTGTGGTATTAAGCTTAAACAAGAAGAACTGTTTAATAGACATTTGGAGTGGCATGCCACAAGAGAACATGGTCCAATTAAGGCATCAAGAAGTTGGTATGCTGAGTCTAGTGACTGGATTGCTGGCAAGGCAGAATATTCATCTGAGTCTGGGTTTAATGATTCTGTTGATGTACACGAACAAAAAACAGACAGCAGTCAATTGGATACGATGGTTCTAGCAGATGAAAACCAGTGTCTGTGTGTATTGTGTGGCGAGCTATTTGAAGATGCGTACTGTCATGAAAGGAACGAGTGGATGTTCAAAGGGGCCGTTTACATGAACTATTCAGATGTCAACTGTGAGATGGAAAGTAGAAATGTGGGTCCCATCATTCATGCCAAATGCTTATCAGAGAACTCAATCGTCACCAATTTGGCCTTTCTACAAAAACAGATTGCATAA 3009 0.4337 MNMERSLDRSREPGPKKPRLIEELSARQLPLRPAAVTTLPSTRFRAYDRDSGGGGGYQPQPPPHQELVIQYKTALAELTFNSKPIITNLTIIAGENLSAAKAIAATVCANIIEVPSDQKLPSLYLLDSIVKNIGRDYIKYFASRLPEVFCKAYRQVDPCVHSSMKHLFGTWKGVFPPQSLQMIEKELGFAPAVNSSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSRSKGVVNDMTEAVLNSNEDLERPDRALSAARPWLDPRINMLCCILQNNQHTHRDAFNDSVPEKSMDGSSYGGSEYSSVISSNLGSGAGRTGSKLIDLGHDRTWFKTDGGDADTTSGQRNGFNLKHSFSNHEAPKSMNLDAHCQPRQSITNKQNDVMSCNWKTSEEEEFMWDEIDNGLIDHGPNVSKTLSTDTWMADVENLEGEDHLQITRPFGAKVNREISTVKNQLPGLGGHPPSSWQLQNLKPGYSEGFVSSHSALPANASSLTVKKGNQSFMSNSVVGRVKFVGQQFDSGETESPSWQSPLRQQSPSLPGTVHHPHSMQNFADQELPQNLKTSQFLGGPITQHIRDHSLTLRPIVQVGNLRRSQEKDMQGPLSSMTSFRPKLQQKQLDPSQSKVSLTRETSAQLTTNNLSAAPVKSGVIPKKSITCDPDPRKHPSQTGVQPTQSGRPTTLDPLHNDSSTLPKNTQGKAGQPPQRLSTQPPASSNISSSSAPTLNTAKNNKLNPISNLLSSLVAKGLISAETESPTMVPSEVPKGSKDQTEIITTSCSLPVTSISGSAAVPVSSSGDEVDSATKTSLASPQSTSTEIRNLVGFDFRPNVIREFHPSVIRELWDDFPHNCKVCGIKLKQEELFNRHLEWHATREHGPIKASRSWYAESSDWIAGKAEYSSESGFNDSVDVHEQKTDSSQLDTMVLADENQCLCVLCGELFEDAYCHERNEWMFKGAVYMNYSDVNCEMESRNVGPIIHAKCLSENSIVTNLAFLQKQIA* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1589 1002 Gene3D - 60 188 IPR008942 -
Gso19g1589 1002 MobiDBLite consensus disorder prediction 523 552 - -
Gso19g1589 1002 MobiDBLite consensus disorder prediction 595 734 - -
Gso19g1589 1002 SUPERFAMILY ENTH/VHS domain 63 191 IPR008942 -
Gso19g1589 1002 MobiDBLite consensus disorder prediction 1 23 - -
Gso19g1589 1002 SMART 558neu5 66 188 IPR006569 -
Gso19g1589 1002 MobiDBLite consensus disorder prediction 597 648 - -
Gso19g1589 1002 MobiDBLite consensus disorder prediction 42 62 - -
Gso19g1589 1002 MobiDBLite consensus disorder prediction 670 734 - -
Gso19g1589 1002 MobiDBLite consensus disorder prediction 793 815 - -
Gso19g1589 1002 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 993 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Gso19g1589 1002 Pfam CID domain 73 181 IPR006569 -
Gso19g1589 1002 MobiDBLite consensus disorder prediction 1 26 - -
Gso19g1589 1002 ProSitePatterns Zinc finger C2H2 type domain signature. 853 873 IPR013087 -
Gso19g1589 1002 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 993 - -
Gso19g1589 1002 CDD CID_Pcf11 68 180 - -
Gso19g1589 1002 ProSiteProfiles CID domain profile. 63 191 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1589 Gso-Chr19 44801383 44808480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1589 825 987 C2H2 Transcription Factor Family AT4G04885 37.059 9.38e-31 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso19g1589 CID 3.4e-13 CL0020