Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1588 ATGGAAATGCCTGCCAGAAGATCCGGCAACTACACCCTCCTCAGTCAAACTCCTGACGACAACTTAACGGCGCCGTTGTTCGGTTGCTCCTCCGGCGACGGTCAAATCAACAGCAGCAAGTTCGAGAGAGTCTCCGATTGGGACTCCGGCGTCGAACACCGACAGGGGAATCGGATCGGGAATTTGCACTCCTCGTTCGGGATGCAGCGGCAGTCCAGCGAGGGCAGTTTCGGCGAGAGCTCTCTCTCCGGCGAGTTCTACGCGCCGACTCTGTCGGCTATCGCGGCGAATGAGATCGACGGATTCAGAGGCACGTTTGCGGGAAATTCGGCGGCGAGGAGCGGAGGTTCCTCCGGCAAGAGCTGGGCGCAGCAGACGGAGGAGAGTTACCAATTACAGTTGGCACTGGCTCTTCGGCTTTCCTCGGAGGCCACGTGTGCTGATGATCCCAATTTTCTGGATCCCGTGCCCGACGAATCCGCGTTGAGGTCTTTGTCCTCGTTTTCCGCAGAGGCAGTGTCGCATAGGTTTTGGGTGAAGGGATGCCTATTATACTTCGACAAAATTCCTGATGGCTTTTATCTAATTCATGGGATGGATCCCTATGTATGGACTGTGTGCACCAATCTTCAGGAAAATGGCCGAATTCCTTCGCTTGAGACACTAAAATCTATAAATCCTTCTGATTCTTCACTTGAAGTAGTTTTTGTGGATAGACGTAATGATCCTAGCTTACGAGAACTGCAAAACAAAGTACAAGACATTTCTTGTTGCTGCATAGCAACAACTGATGTTGTAGACCAGCTTGCGAAGCTGGTTTGCAATTGTATGGGGGGCTCAGCTTCTGTATGGGAAGATGATCTTTTTCCTATATGGAGGGAGCGCATTAATGATCTAAGAGATTGCTTAGGATCTGTCGTTGTACCAATTGGAAGTCTATCTACTGGACTTTGCAGGCATCGTGCTGTATTATTCAAAGTACTAGCTGACACCATTGATTTGCCATGCCGAATTGCTAAGGGCTGTAAATATTGTTCAAGAGATGATGCCTCCTCATGTCTTGTTCGATTTGGACTTGACAGGGAATACATGGTTGATCTTATTGGGAAGCCGGGTTGCTTATGCGAGCCTGATTCCTTGGTCAATGGTCCATCTTCCATTTCATTTTCTTCACCCTTGTGCTTTCCGAGACATAAACCAGCTGAACCTACCATTGATTTCAGGTCACTGGCCAAACAATATTTCTCGGATTGTATGTCTGCTGAGCTTGTCTTCGATAGTAGTTCTGCAGAACAGTATGAAAGGCAGTACAGGGACAGGAACCCTGGGTCAATTCCAAATGATAACAACAGAAGTTCTCTCGTTCCTCTGCATCCACAACCTTATCGTTCAAGTGCACATGATCGAGGCTATGAAACATTTAAATCAGGTAAGCCTCCTCAGAATGCTGTAGAGCCGACCATGACAAGCCGGGATTCATTGCCTTTAAAGCATAACCGTCCTGGTCATAGAGATACACAGACCCGACTACTGATTCCTAGCAAACCAACTAGAGAGTTTTCCCTTGATATGGAGGATTTGGACATATCGTGGACTGATCTTGTTTTGAAAGGGAGAATTGGATCAGGTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCGGAGGTTGCTGTGAAAATTCTGATGGAACAAGACTTCAAAGGTGAACGCTTCAAGGAATTCCTGAGGGAGGTTGCAATAATGAAAGGCTTACGGCATCCAAACATTGTTTTACTTATGGGTGCAGTCACTAAGCCTCCTAATTTATCAATTGTCACGGAATATTTGTCAAGGGGTAGCTTGTACAGGCTGTTGCATAAACCTGGCGCTACAGAGATGTTGGATGAGAGACGTAGGCTTAGTATGGCTTATGATGTGGCTAAGGGAATGAATTATCTTCATAAACGCAATCCTCCCATTGTTCATAGAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATATACAGTGAAGGTTGGTGATTTTGGGCTTTCCCGACTAAAGGCAAATACATTTCTCTCATCCAAGTCAGCTGCTGGGACTCCTGAGTGGATGGCTCCAGAAGTTCTTCGTGACGAGCCATCCAATGAGAAGTCAGATGTTTACAGCTTTGGTGTCATCTTGTGGGAGATCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCACCACAGGTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGATTTAAATCCTCAATTAGCCTCTATAATTGAGTCTTGTTGGGCCAATGAACCCTGGAAACGCCCTTCTTTTTCAAGTATAATGGATTCTTTGAAAGTATTGCTCAAGCCCCCTATGCCTCAACCTGGTCGTCCAAGCATGTCATTACTGACCTGA 2427 0.4656 MEMPARRSGNYTLLSQTPDDNLTAPLFGCSSGDGQINSSKFERVSDWDSGVEHRQGNRIGNLHSSFGMQRQSSEGSFGESSLSGEFYAPTLSAIAANEIDGFRGTFAGNSAARSGGSSGKSWAQQTEESYQLQLALALRLSSEATCADDPNFLDPVPDESALRSLSSFSAEAVSHRFWVKGCLLYFDKIPDGFYLIHGMDPYVWTVCTNLQENGRIPSLETLKSINPSDSSLEVVFVDRRNDPSLRELQNKVQDISCCCIATTDVVDQLAKLVCNCMGGSASVWEDDLFPIWRERINDLRDCLGSVVVPIGSLSTGLCRHRAVLFKVLADTIDLPCRIAKGCKYCSRDDASSCLVRFGLDREYMVDLIGKPGCLCEPDSLVNGPSSISFSSPLCFPRHKPAEPTIDFRSLAKQYFSDCMSAELVFDSSSAEQYERQYRDRNPGSIPNDNNRSSLVPLHPQPYRSSAHDRGYETFKSGKPPQNAVEPTMTSRDSLPLKHNRPGHRDTQTRLLIPSKPTREFSLDMEDLDISWTDLVLKGRIGSGSFGTVHHAEWNGSEVAVKILMEQDFKGERFKEFLREVAIMKGLRHPNIVLLMGAVTKPPNLSIVTEYLSRGSLYRLLHKPGATEMLDERRRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVGDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWEIATLQQPWSNLNPPQVVAAVGFKGKRLEIPRDLNPQLASIIESCWANEPWKRPSFSSIMDSLKVLLKPPMPQPGRPSMSLLT* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1588 808 Pfam Ethylene-responsive protein kinase Le-CTR1 170 375 - -
Gso19g1588 808 Gene3D Transferase(Phosphotransferase) domain 1 613 797 - -
Gso19g1588 808 ProSitePatterns Protein kinases ATP-binding region signature. 540 561 IPR017441 GO:0005524
Gso19g1588 808 MobiDBLite consensus disorder prediction 480 494 - -
Gso19g1588 808 MobiDBLite consensus disorder prediction 56 79 - -
Gso19g1588 808 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 110 797 - -
Gso19g1588 808 ProSitePatterns Serine/Threonine protein kinases active-site signature. 655 667 IPR008271 GO:0004672|GO:0006468
Gso19g1588 808 SUPERFAMILY Protein kinase-like (PK-like) 511 788 IPR011009 -
Gso19g1588 808 PRINTS Tyrosine kinase catalytic domain signature 608 621 IPR001245 GO:0004672|GO:0006468
Gso19g1588 808 PRINTS Tyrosine kinase catalytic domain signature 649 667 IPR001245 GO:0004672|GO:0006468
Gso19g1588 808 PRINTS Tyrosine kinase catalytic domain signature 696 706 IPR001245 GO:0004672|GO:0006468
Gso19g1588 808 PRINTS Tyrosine kinase catalytic domain signature 715 737 IPR001245 GO:0004672|GO:0006468
Gso19g1588 808 PRINTS Tyrosine kinase catalytic domain signature 759 781 IPR001245 GO:0004672|GO:0006468
Gso19g1588 808 MobiDBLite consensus disorder prediction 442 459 - -
Gso19g1588 808 MobiDBLite consensus disorder prediction 433 507 - -
Gso19g1588 808 ProSiteProfiles Protein kinase domain profile. 534 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1588 808 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 110 797 - -
Gso19g1588 808 SMART serkin_6 534 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1588 808 Gene3D Phosphorylase Kinase; domain 1 527 612 - -
Gso19g1588 808 MobiDBLite consensus disorder prediction 58 79 - -
Gso19g1588 808 Pfam Protein tyrosine and serine/threonine kinase 535 788 IPR001245 GO:0004672|GO:0006468
Gso19g1588 808 CDD STKc_MAP3K-like 540 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1588 Gso-Chr19 44780016 44796017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1588 1 801 MAP Kinase Kinase Kinase AT5G03730 64.235 0.0 950
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gso19g1588 PK_Tyr_Ser-Thr 4.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1588 K14510 - gmx:100810555 1618.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1588 19 44780016 44796017 Gso3g1606 3 41990541 42001477 GST
Gso19g1588 19 44780016 44796017 Gso10g0572 10 6525313 6535091 PCT
Gso10g0572 10 6525313 6535091 Gso19g1588 19 44780016 44796017 PCT