Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1573 ATGGATTGGCATCATGGCACAAAACCATTTGTTCCTCGGCCAGAGACCTTAAGCTTCTTCTACAACTATGACAACAACAACTCATATCCAGGAGTGGAAGTGAAACAAGCGGCATTGATGGAGACAGGAGAAAGGTCGGTTCCGGCAATGGACCGTGGAAACAAAGAGAAGAAGAAGCGGTTAACAAATAACCAGATAGAGTTATTGGAGAGGAGTTTTCAGGAGGAGATAAAGTTGGACCCTGAAAGGAAGATGAAGCTTTCGAGGGAGCTAGGTCTGCAGCCTCGCCAAATCGCTGTTTGGTTCCAAAATAGACGTACAAGGTGGAAGGCCAAGCAGCTTGAGCACTTGTACGATATGCTTAAACACCAATATGATGTCGTCTCCAACGAAAAGCAGAAGCTTCAAGAAGAGGTTATTAAGTTGAAGGCAATGCTAAGTAAACAGCAAGGTTATTGGACGCAAAAATTTGGAGGTTATACAGAAATATCTGGGGAAGAAACAGTAGAAAGCACGTCAGAGGGTCTAAGGGGAAAGAGTAACATTGAGCATGTTGCAGATCAAGGCTACTGTTCTTTCGCTGTGGAGGATTATAACACCACTGTTTCACTGCCTCACTGCCACTGGCCAGTTGTGCCTTATTAG 645 0.4465 MDWHHGTKPFVPRPETLSFFYNYDNNNSYPGVEVKQAALMETGERSVPAMDRGNKEKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKAKQLEHLYDMLKHQYDVVSNEKQKLQEEVIKLKAMLSKQQGYWTQKFGGYTEISGEETVESTSEGLRGKSNIEHVADQGYCSFAVEDYNTTVSLPHCHWPVVPY* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1573 214 Gene3D - 49 119 - -
Gso19g1573 214 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Gso19g1573 214 SUPERFAMILY Homeodomain-like 45 114 IPR009057 -
Gso19g1573 214 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Gso19g1573 214 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Gso19g1573 214 Pfam Homeodomain 55 110 IPR001356 GO:0003677
Gso19g1573 214 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Gso19g1573 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 211 IPR045224 GO:0003700
Gso19g1573 214 SMART HOX_1 54 116 IPR001356 GO:0003677
Gso19g1573 214 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 211 - -
Gso19g1573 214 Coils Coil 111 145 - -
Gso19g1573 214 Pfam Homeobox associated leucine zipper 112 146 IPR003106 GO:0006355|GO:0043565
Gso19g1573 214 CDD homeodomain 55 113 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1573 Gso-Chr19 44650189 44652184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1573 7 146 Homeobox Transcription Factor Family AT2G36610 46.341 1.32e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso19g1573 Homeodomain 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1573 - - gmx:100807872 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1573 19 44650189 44652184 Gso3g1591 3 41840013 41842112 GST
Gso10g1289 10 38915509 38918637 Gso19g1573 19 44650189 44652184 PCT