Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1565 ATGTTCCTTCCCCTAATTCTCCATGCAAAAATGATTGCTGAATCAAACATGAGACCCAACTTCCATTTTTGCTATGCCTTTCTTCTTATCCTTGTCCTTGGCCATCACACTTCTTCACAGAAGACTTGTACAAATTGTGGCTCTATGCAAGTTCCGTACCCTTTGAGCACAGATTCAACTTGTGGTGATCCACACTACAAGCTTCGTTGTGATCCCCACTCTCAAAGGCTTTTCTTCGACACCCTCAACGGAAGTTCCTATCTTGTTCTAAGAATCATGTCTTCAAACCAACGCATGGTGGTAGAGCCATCACCTTGGTTACCAGGTTCATGTGTCACACAAGACATGCCTAGAAGCAATGGTATATGGTTAAACCAGTCACTCCCTTTCAACATAACTTCATCCAACACAGTGTTCCTCTTTAACTGTTCCCCGCGCCTCTTGGTTTCTCCACTTAACTGCACTTCTTCTAGTATTTGCCATCGTTATTTGGAGAATTCAGGCCATGTTGACACAAAAAGAGCACTTGAGTGTGCAAATGATCTTCACCCTTGTTGCACTTTTCTAGCTGGAGGGATACCTTCAGCTTACAGAATCAGGCTTCATGATTCTGGCTGCAAAGCATTCAGAAGCATAATTCATTTGAACCAAGACAAGCCTCCGAATCAGTGGGAGGAAGGGCTTGAAATCCAATGGGCTCCTCCACCTGAACCAGTGTGCAAGACACAAAGGGATTGCTCTGAAGACTCTAAGTGTTCCCCTACAAGTAGAAATGGCCTATTTCGCTGTCTTTGTAATGGGGGACACATTTGGAACCCTTTTGAAGCAACCTGTGTCAGGTATGAGAGAAAATCCAAATGGAAAACCAGCTTGGTGGTCTCAATAGGGGTTGTTGTTACTTTTTTCTCTCTTGCTGTGGTTCTGACCATCATCACAAAGTCCTGCAAACTCTCTACCTATAAAGAGAATCAGGCCAAGGAAAGAGAAGATAAGCTGAAATCAAGTGCTGTGGAGAAGCCTTGCAGGATGTTTCAACTGAAAGAGGTGAAGAGAGCAACAAACGGTTTTTCCCACGAGAGGTTCTTGGGGAGTGGTGGCTTTGGGGAAGTTTTCAAAGGTGAATTACAAGATGGAACATTGGTGGCTGTGAAGAAAGCTAGAGTGGGAAACCTGAAAAGCACCCAACAAGTGCTTAATGAGGTTGCAATACTCTCTCAAGTGAATCACAAGAACCTGGTCAGGCTCTTGGGGTGTTGTGTGGAATCTGAGCTTCCACTGATGATCTATGAGTATATCTCAAATGGGACCCTCTATGACCATCTTCATGGTAGGTATTGTTCCAACTTTCTAGACTGGAAAACAAGGCTCAAAGTTGCTTTTCAAACTGCAGAAGCATTGGCTTACTTGCATTCTGCTGCACACACTCCAATCTACCATAGAGATATTAAGTCAACAAACATACTATTGGATGATGAATTCAATGCCAAGGTCTCAGATTTTGGACTCTCTAGATTGGCTAGCCCAGGACTGAGTCACGTGTCAACGTGTGCTCAGGGAACGTTGGGGTACTTGGATCCTGAATACTACCGCAACTACCAGTTAACAGATAAAAGTGATGTTTATAGTTATGGGGTGGTGTTGCTAGAGCTTTTGACATCACAGAAAGCGATTGACTTCAATCGTGATCAAGATGATGTCAACCTAGCCATTCATGTGAACCAACATGCCAGCAATGGTACAATCATGGAAGTGGTGGATCAAAGGCTTCTTATTTCCGTGGAGACCTTGTTGGGGGATAAAATGTTCACAAGCATAAAACTCTTCTTGGAGCTTGCACTTGAATGTCTAAGGGAGAAGAAAGGTGAAAGGCCTAATATGAGGGATATTGTTCAACGCTTACTATGCATAATTAGGATTGTAGAACAAGAGTGA 1932 0.4343 MFLPLILHAKMIAESNMRPNFHFCYAFLLILVLGHHTSSQKTCTNCGSMQVPYPLSTDSTCGDPHYKLRCDPHSQRLFFDTLNGSSYLVLRIMSSNQRMVVEPSPWLPGSCVTQDMPRSNGIWLNQSLPFNITSSNTVFLFNCSPRLLVSPLNCTSSSICHRYLENSGHVDTKRALECANDLHPCCTFLAGGIPSAYRIRLHDSGCKAFRSIIHLNQDKPPNQWEEGLEIQWAPPPEPVCKTQRDCSEDSKCSPTSRNGLFRCLCNGGHIWNPFEATCVRYERKSKWKTSLVVSIGVVVTFFSLAVVLTIITKSCKLSTYKENQAKEREDKLKSSAVEKPCRMFQLKEVKRATNGFSHERFLGSGGFGEVFKGELQDGTLVAVKKARVGNLKSTQQVLNEVAILSQVNHKNLVRLLGCCVESELPLMIYEYISNGTLYDHLHGRYCSNFLDWKTRLKVAFQTAEALAYLHSAAHTPIYHRDIKSTNILLDDEFNAKVSDFGLSRLASPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLTSQKAIDFNRDQDDVNLAIHVNQHASNGTIMEVVDQRLLISVETLLGDKMFTSIKLFLELALECLREKKGERPNMRDIVQRLLCIIRIVEQE* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1565 643 ProSitePatterns Protein kinases ATP-binding region signature. 362 385 IPR017441 GO:0005524
Gso19g1565 643 CDD STKc_IRAK 362 633 - -
Gso19g1565 643 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 33 643 - -
Gso19g1565 643 Gene3D Transferase(Phosphotransferase) domain 1 432 642 - -
Gso19g1565 643 Pfam Wall-associated receptor kinase galacturonan-binding 43 101 IPR025287 GO:0030247
Gso19g1565 643 Gene3D Phosphorylase Kinase; domain 1 316 431 - -
Gso19g1565 643 ProSiteProfiles Protein kinase domain profile. 356 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1565 643 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 33 643 IPR045274 GO:0007166
Gso19g1565 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Gso19g1565 643 SMART serkin_6 356 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1565 643 SUPERFAMILY Protein kinase-like (PK-like) 333 633 IPR011009 -
Gso19g1565 643 Pfam Protein kinase domain 357 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1565 Gso-Chr19 44598733 44601140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1565 43 643 Receptor kinase-like Gene Family AT5G02070 47.049 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gso19g1565 Pkinase 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1565 - - gmx:100804678 1320.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1565 19 44598733 44601140 Gso3g1584 3 41787862 41790376 GST