Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1563 ATGGCGGTTCATCCGTCGGTCGCCGCCGCTCCGGCGTCGCTCTATGTCGGCGACCTCCACCCCGACGTCTCCGACAGCCACCTCGTCGACGCATTCTCCGAGTTCAAGAGCCTCGCGTCTGTTCGCGTCTGCAAAGACTCCTCCACGGGGAAATCCCTCTGTTACGGTTACCTCAACTTCGTTTCCCCTCAAGACGCAATTCGTGCAATCGAGCTGAAAAATAACTCCACGCTTAATGGGAAAGCGATGAGGGTGATGTGGTCGCGTCGTGATCCTGATGCGAGGAAAAGCGCTATAGGGAACTTGTTTGTTAAGAACTTACCCGAATCGATAGATAATGCTGGGCTGCAAGATATCTTCAAAAAATACGGGAATATTTTGTCCAGCAAAGTTGTCACGTCTGAGGATGGGAAGAGCAAAGGATACGGCTTTGTTCAATTTGAATCAGAAGAATCTTCGAAAGTTGCTATCGAGAAGCTGAATGGCTATACTGTTGCTGATAAGGAGTTATATGTTGGGAAGTTTGTCAAAAAAAGTGATCGCATTTTGCCTGGCCCTGATGCTAGATATACAAATTTGTACATGAAGAATTTGGACCTGGATGTTTCAGAAGCAACACTGCAGGAGAAGTTTTCCTCTTTCGGGAAAATTGTTAGCTTGGTTATTGCAAAGGACAACAATGGAATGTCCAAGGGCTTTGGCTTTGTGAACTATGATAACCCAGATGATGCTAAAAAGGCAATGGAAGCAATGAATGGATCACAATTAGGTTCTAAGATTCTGTATGTAGCCAGAGCACAAAAGAAGGCTGAACGTGAGCAGATCTTGCACCACCAATTTGAGGAGAAGCAGAAGGAACAAATCTTGAAATACAAGGGATCGAACATTTATGTGAAGAACATTGATGACCATGTAAGTGATGAAGAACTGAGGGATCATTTTAGTGCATGTGGCACTATAACTTCTGCAAAAATTATGCGAGATGACAAAGGGATAAGTAAAGGGTTTGGCTTTGTCTGCTTCTCCACTCCTGAGGAGGCCAATAAAGCTGTGAACACATTTCATGGATTCATGTATCATGGAAAACCACTATATGTTGCTCTTGCTCAGAGGAAAGAGGATAGGAAAGCACAATTGCAGCTCCAGTACGCACAACAACTGGCACGACTATCTGGACCTTCGACTGCCATTATCCCTAGTGGATATCCTCCTTACTACTATGCAGCTAGTGGCGTTATTTCACACGTGCCTCCTCGAGCTGGGCTGATGTATCAACATCTGGCATTGAGACCGGGATGGGGGGCTAATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGGAATTCAATAGCACAGGGAAATACTCACTCTGGTACTTATTTACCACAAGCCCAGCAGATTTCTCAGCCAGTGATCTCTTCAAGAGATTCAAGTACTCAGCAGAGAACCGGACAGGCTAGGTACATACCTAGTGGACGCCAGCGTGATGTGGAAAAAGGATCTGGATCCTCATCTGTTGGTTCAAACTCTGGCAGAGGAGGATCCCAGGGGTCAGAAATGCTGCATAGCTTGCTTGCTGGTGCTGCTCCTGAGCAGCAGAAAGAGATTCTCGGGGAGCATCTTTACATGCTTGTTCATAAACTAAAGCCTACCCTAGCAGCAAAAATAACAGGGATGCTTCTGGAGATGGACAATGGAGAATTACTGCTTCTCCTGGAATCGCCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTGTCCAAGTGCTTAAGAACTCTAAGACCAAAGTTTCTGGCCAGGACGTACTTCATTCAAATTTCCTTTCAGCTGAGGTTGCAGTTAACTGA 1911 0.4594 MAVHPSVAAAPASLYVGDLHPDVSDSHLVDAFSEFKSLASVRVCKDSSTGKSLCYGYLNFVSPQDAIRAIELKNNSTLNGKAMRVMWSRRDPDARKSAIGNLFVKNLPESIDNAGLQDIFKKYGNILSSKVVTSEDGKSKGYGFVQFESEESSKVAIEKLNGYTVADKELYVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVARAQKKAEREQILHHQFEEKQKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMYHGKPLYVALAQRKEDRKAQLQLQYAQQLARLSGPSTAIIPSGYPPYYYAASGVISHVPPRAGLMYQHLALRPGWGANGFAPPARSFQQSPVPAVSNNTRQHRQNRGKLNGNSIAQGNTHSGTYLPQAQQISQPVISSRDSSTQQRTGQARYIPSGRQRDVEKGSGSSSVGSNSGRGGSQGSEMLHSLLAGAAPEQQKEILGEHLYMLVHKLKPTLAAKITGMLLEMDNGELLLLLESPESLSAKVEEAVQVLKNSKTKVSGQDVLHSNFLSAEVAVN* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1563 636 Pfam Poly-adenylate binding protein, unique domain 547 611 IPR002004 GO:0003723
Gso19g1563 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Gso19g1563 636 PANTHER POLYADENYLATE-BINDING PROTEIN 5 526 - -
Gso19g1563 636 PANTHER POLYADENYLATE-BINDING PROTEIN 536 621 - -
Gso19g1563 636 SUPERFAMILY PABC (PABP) domain 543 622 IPR036053 GO:0003723
Gso19g1563 636 Coils Coil 263 283 - -
Gso19g1563 636 CDD RRM2_I_PABPs 99 174 IPR045305 -
Gso19g1563 636 SUPERFAMILY RNA-binding domain, RBD 291 383 IPR035979 GO:0003676
Gso19g1563 636 SUPERFAMILY RNA-binding domain, RBD 11 93 IPR035979 GO:0003676
Gso19g1563 636 SMART rrm1_1 101 173 IPR000504 GO:0003723
Gso19g1563 636 SMART rrm1_1 192 264 IPR000504 GO:0003723
Gso19g1563 636 SMART rrm1_1 13 86 IPR000504 GO:0003723
Gso19g1563 636 SMART rrm1_1 295 367 IPR000504 GO:0003723
Gso19g1563 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Gso19g1563 636 CDD RRM4_I_PABPs 293 371 - -
Gso19g1563 636 MobiDBLite consensus disorder prediction 519 539 - -
Gso19g1563 636 Coils Coil 369 389 - -
Gso19g1563 636 Gene3D - 537 617 - -
Gso19g1563 636 Gene3D - 4 100 IPR012677 -
Gso19g1563 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Gso19g1563 636 SMART poly_2 551 614 IPR002004 GO:0003723
Gso19g1563 636 SMART rrm2_1 101 173 IPR003954 GO:0003676
Gso19g1563 636 SMART rrm2_1 192 264 IPR003954 GO:0003676
Gso19g1563 636 SMART rrm2_1 295 367 IPR003954 GO:0003676
Gso19g1563 636 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 539 616 IPR002004 GO:0003723
Gso19g1563 636 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 612 IPR006515 GO:0003723
Gso19g1563 636 Gene3D - 101 180 IPR012677 -
Gso19g1563 636 Gene3D - 181 275 IPR012677 -
Gso19g1563 636 Gene3D - 276 382 IPR012677 -
Gso19g1563 636 SUPERFAMILY RNA-binding domain, RBD 101 272 IPR035979 GO:0003676
Gso19g1563 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Gso19g1563 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Gso19g1563 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Gso19g1563 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Gso19g1563 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Gso19g1563 636 MobiDBLite consensus disorder prediction 441 510 - -
Gso19g1563 636 CDD RRM1_I_PABPs 13 92 - -
Gso19g1563 636 MobiDBLite consensus disorder prediction 440 540 - -
Gso19g1563 636 PANTHER RNA BINDING PROTEIN 5 526 - -
Gso19g1563 636 PANTHER RNA BINDING PROTEIN 536 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1563 Gso-Chr19 44577121 44582052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1563 12 634 Eukaryotic Initiation Factors Gene Family AT2G36660 54.459 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1563 K13126 - gmx:100779547 1187.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1563 19 44577121 44582052 Gso3g1582 3 41765610 41770253 GST
Gso19g1563 19 44577121 44582052 Gso10g0550 10 6160181 6164746 PCT
Gso10g0550 10 6160181 6164746 Gso19g1563 19 44577121 44582052 PCT