Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1558 ATGGAGGACACAGCTGTTCTGGTACCTCCTTGGCTTGAACAACTTCTTCACACACCTTTCTTCAACGTGTGTCGGATTCACGCAGAGGCCGCTAGAAGCGAGTGTAATATGTTTTGCCTACATTGCAATGGCGAAGCCTTTTGCTTTTATTGCAGTTCTTCAAGACACAAAGATCATCAAGTCATTCAGATAAGGCGATCTTCTTATCACGATGTAGTGAGGGTTTCAGAAATCCAGAAAGTGTTGGACATAAGTGGAGTGCAGACATATGTAATCAACAGTGCTCGAGTTTTGTTCCTGAATGTGAGGCCTCAGCCAAAATCTGGAAAAGGAGTAGCTCACATTTGTGAGATTTGCGGAAGGAGCCTCTTGGACCCATTTCGGTTTTGTTCTTTGGGATGTAAGCTTGAAGGAATAAGGAAAAATGGGGATGCAAGCTTTGCTTTGGATGGTAGGAATGAAGAATTAACAATGGATACTTCAAGAGGATCAGTCTCATCAAGACAGCAAGAAGAAGAATTGCGTGAAGGTTCAACACAAGACATGTATCCAGCCACGCCTTCTCCATCTGCTTCAAATTCAAGGAGAAGAAAAGGCATACCTCATAGGGCACCTTTTGGCTCCTAA 627 0.4354 MEDTAVLVPPWLEQLLHTPFFNVCRIHAEAARSECNMFCLHCNGEAFCFYCSSSRHKDHQVIQIRRSSYHDVVRVSEIQKVLDISGVQTYVINSARVLFLNVRPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLEGIRKNGDASFALDGRNEELTMDTSRGSVSSRQQEEELREGSTQDMYPATPSPSASNSRRRKGIPHRAPFGS* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1558 208 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 207 - -
Gso19g1558 208 Pfam PLATZ transcription factor 65 136 IPR006734 -
Gso19g1558 208 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 2 207 - -
Gso19g1558 208 MobiDBLite consensus disorder prediction 181 195 - -
Gso19g1558 208 MobiDBLite consensus disorder prediction 152 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1558 Gso-Chr19 44550220 44552484 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Gso19g1558 PLATZ 5.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1558 - - gmx:100803083 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1558 19 44550220 44552484 Gso3g1578 3 41745581 41747776 GST
Gso19g1558 19 44550220 44552484 Gso10g0546 10 6120446 6122505 PCT
Gso10g0546 10 6120446 6122505 Gso19g1558 19 44550220 44552484 PCT