Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1556 ATGGACGCCGCCGTGAAGCCGGAGACGGAATACGCGGCCGTTTCGACGGATCAGCCTCGGAAAGTTTCGGTGGTGAATGGTTACATTGTCTACACTCGCGCCAAGAGGTCACTGGATTCGTGCAACGGTTTTTCAGAACACGCGGAATTGAAGGATAACGCCGAGGTTGAAGTTAAAACGGAGAACGGAGAGTGTGAGAAGCTGAAAAATGAGTCCACAGAGGTGGTTGCGAGGACGCGCAAGCGGAGCCGGCGATCGGCGTTGGAAGCGAAGGTTGAGTGTTGTGATCAGATGGTTGTGAGTGAGACGGAACAAGTAGTTGCGAATGGCGGAAGCGGAATCAACGGTGCATTGGGAGCTCCGAGGAATAAGATGGAGTTGAAGATGTCGAAGAAGATTGTGGTCAACAGGAAGCCTATGACTGTGAAAAAGCTCTTTGATACAGGTTTTCTTGATGGCGTTTCCGTGGTTTACATGGGCGGCATTAAGAAGGCTTCGGGATTACGAGGTGTGATTAGAGATGGGGGAATATTGTGCTCGTGCTGTCTATGCAATGGACGCAGGGTTATTCCACCTTCCCAATTCGAGATCCATGCTTGCAAACAATATAGGAGAGCTGCGCAGTATATTTGCCTCGAAAATGGGAAGAGCCTGCTTGATCTGTTGAGAGCATGCAGGGGAGCTACCCTGCATACTTTGGAGGTGACAGTTCAAAATTTTGTTTGTTCTCCACATGAAGAAAGATACTTTACATGTAAAAGGTGCAAAGGATGTTTCCCTTCTTCGTTTGTGGAAAGAGTGGGGCCTATATGCCGTTCTTGTGTGGAATCAAGGAAGTCTGAAGAAAGTTCAAATAACGTAGTTGGCAAAAGAGTTAGGTCCCCTAGACCAGTGGTTCTTTCCAACCCATCCAGTACTTCTGAGCTGTCTGTCTCTTCACAAGTTAAGAGACACAGGAAGAAAAGAACAAAGGCATCAAAAAGGATTATCTGTTCAAATACTTCCAAGAATGCTTCTGTGGCTGTTCTACCCCGGAAGAAAAATTTGTTGAAGATGAAAAAGAAGTCGCTGTCAGTAAAGTTGAAGTCCCCCAAAAAAACTTTAAATTTGAAATCTAATAAGAGTCAATGGAGGATAACTAAGAAGGATCAGCGATTGCATAAGTTAGTTTTTGAAGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCTCGTGGACAGAAATTGCTTGAAGGTTTCAAAATGGGCTCTGGAATTGTTTGTCGATGCTGCAACACTGAGATCAGCCCTTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACGTCAAATGGGGTGTCTCTCCATGAGTTGGCAATATCTCTCTCAAAAGATAGAAAATACTCTGCAAAGGACAATGATGATCTATGCATTGTTTGTTGGGATGGTGGTAATCTATTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCAGCTCTATCAAGTATTCCACGTGGTGACTGGTACTGCCAATTTTGCCAAAACATGTTCCAGAGAGAAAAGTTTGTGGCGCACAACGCCAATGCTGTGGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAACAGATTGCCAATAGATGCATTCGCATAGTCAAAGACATTGAAGCTGATCTTAGTAGCTGTGCTTTATGCAGGGGTGTTGATTTCAGCAGATCTGGGTTTGGTCCACGCACAATAATACTCTGCGATCAGTGTGAAAAGGAATATCATGTTGGTTGTTTGAGGGATCACAAGATGGCATATTTAAAGGAACTGCCAGAAGGTAATTGGCTTTGTTGCAATGATTGCACAAGAATACACTCTACTTTGGAGAATCTTTTGGTTAAGGGGGCTGAGAGACTCCCTGAATCTCTCTTGGGTGTTATAAAGAAGAAGCAAGAGGAAAAAGGATTAGAACCCATCATTGATGTAAGATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACTAGACCATTGCTTTTGGAGGCTGTTTCAATCTTTCATGAATGCTTTAATCCTATAGTTGATGCAGCTAGTGGACGTGACCTTATTCCAGCCATGGTTTATGGGAGGAATGTGCGAGGTCAGGAGTTTGGAGGAATGTATTGTGCATTACTAATAGTCAATTCATCTGTGGTATCTGCGGGCATGCTTAGAATTTTTGGCTCAGATGTTGCTGAACTCCCTTTAGTTGCAACGAGTAATGGGAACCATGGAAAGGGCTACTTCCAAACACTCTTCTCCTGCATCGAGAGGCTGCTGGCTTTCTTGAATGTGAAGAATCTTGTACTGCCAGCTGCAGAAGAAGCAGAATCAATATGGACTGATAAATTTGGGTTTAGCAAGATGAATCCAGATGAGCTCACCAACTATAGAAAGAACTGCCATCAGATGGTAAGTTTCAAAGGGACCAATATGCTGCATAAAATGGTACCTTCGTGTCGGGTCATCAATAATCAATCATGA 2535 0.4398 MDAAVKPETEYAAVSTDQPRKVSVVNGYIVYTRAKRSLDSCNGFSEHAELKDNAEVEVKTENGECEKLKNESTEVVARTRKRSRRSALEAKVECCDQMVVSETEQVVANGGSGINGALGAPRNKMELKMSKKIVVNRKPMTVKKLFDTGFLDGVSVVYMGGIKKASGLRGVIRDGGILCSCCLCNGRRVIPPSQFEIHACKQYRRAAQYICLENGKSLLDLLRACRGATLHTLEVTVQNFVCSPHEERYFTCKRCKGCFPSSFVERVGPICRSCVESRKSEESSNNVVGKRVRSPRPVVLSNPSSTSELSVSSQVKRHRKKRTKASKRIICSNTSKNASVAVLPRKKNLLKMKKKSLSVKLKSPKKTLNLKSNKSQWRITKKDQRLHKLVFEENGLPDGTEVAYYARGQKLLEGFKMGSGIVCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKDRKYSAKDNDDLCIVCWDGGNLLLCDGCPRAFHKECAALSSIPRGDWYCQFCQNMFQREKFVAHNANAVAAGRVEGVDPIEQIANRCIRIVKDIEADLSSCALCRGVDFSRSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGNWLCCNDCTRIHSTLENLLVKGAERLPESLLGVIKKKQEEKGLEPIIDVRWRLLNGKIASPETRPLLLEAVSIFHECFNPIVDAASGRDLIPAMVYGRNVRGQEFGGMYCALLIVNSSVVSAGMLRIFGSDVAELPLVATSNGNHGKGYFQTLFSCIERLLAFLNVKNLVLPAAEEAESIWTDKFGFSKMNPDELTNYRKNCHQMVSFKGTNMLHKMVPSCRVINNQS* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1556 844 MobiDBLite consensus disorder prediction 298 312 - -
Gso19g1556 844 MobiDBLite consensus disorder prediction 296 326 - -
Gso19g1556 844 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 44 840 - -
Gso19g1556 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 564 627 IPR013083 -
Gso19g1556 844 SUPERFAMILY FYVE/PHD zinc finger 559 622 IPR011011 -
Gso19g1556 844 ProSitePatterns Zinc finger PHD-type signature. 481 520 IPR019786 -
Gso19g1556 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 466 551 IPR013083 -
Gso19g1556 844 ProSiteProfiles Zinc finger PHD-type profile. 478 523 IPR019787 -
Gso19g1556 844 SMART PHD_3 568 625 IPR001965 -
Gso19g1556 844 SMART PHD_3 480 521 IPR001965 -
Gso19g1556 844 Coils Coil 51 71 - -
Gso19g1556 844 Pfam Tify domain binding domain 170 225 IPR032308 -
Gso19g1556 844 Pfam Tify domain binding domain 418 464 IPR032308 -
Gso19g1556 844 PANTHER AUTOIMMUNE REGULATOR 44 840 - -
Gso19g1556 844 SUPERFAMILY FYVE/PHD zinc finger 467 525 IPR011011 -
Gso19g1556 844 Pfam PHD-finger 481 522 IPR019787 -
Gso19g1556 844 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 722 808 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1556 Gso-Chr19 44503265 44511967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1556 131 841 PHD Transcription Factor Family AT2G36720 54.508 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso19g1556 TDBD 1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1556 - - gmx:100802562 1669.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1556 19 44503265 44511967 Gso10g0540 10 6034476 6046066 PCT
Gso10g1298 10 39030227 39034301 Gso19g1556 19 44503265 44511967 PCT
Gso10g0540 10 6034476 6046066 Gso19g1556 19 44503265 44511967 PCT