Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1555 ATGGGATTCAACAGAACCCTCTTTTGGCTTTCTGTCTTTGTAATTTTTCTCTTTTCTATCATATTTGTTCTTTATACCACGCCACCTTCCCCCGCTGCCAACACCGCCATTAGTCCTCAAGATAGCTTCAGTTTCCAGATTGGTATATTTAGTAAGATTATAAAGCTTAGTGGCGCTGAACACTTTATGTCTCTGATAACAAGTATAGCTAGGAGGAGACATCATCACCGGAGGAGTCATAAGGAAAAATGTGACAGGTCCAAATGGGATTCCAAGCTTATTCAAGACTATAATGTGAGTCTTGTTCTCACGGTTGACTTAAAGGGCTGTGCTAACTTCAGTAGCGTGCAGAAAGCTGTTGATGCTGTTCCTGAATCTAGTTCTGATACCACCCTTATCATAATCGATTCTGGCACATACAGAGAGAAGGTAGTGGTGCAGGCCAACAAAACAAACTTGATAGTTCAAGGTCAAGGGTATCTGAATACAACCATAGAATGGAACGACACCGCAAATTCCACCGGCGGTACTTCCTATAGCTACTCCTTCGCCGTCTTTGCTTCTAAGTTCACTGCTTACAACATCAGCTTTAAGAACACGGCTCCTCCACCGTCACCAGGAGTTGTTGGGGCACAAGCAGTGGCACTGAGGGTAACCGGTGATCAAGCAGCTTTCTATGGTTGTGGGTTTTATGGTGCGCAGGACACACTCAATGATGATGGTGGGAGACATTATTTTAAAGAATGCTTCATCCAAGGATCCATTGATTTCATATTTGGAAATGCTAGATCACTTTATGAGGATTGTACCATAAACTGTGTAGCAAAAGAAGAGAAGGATGGGATTAGCGGGTCGATCACCGCTCAAGGGAGACAATCGATGAATGAGGAAAGTGGATTTTCCTTTGTGAATTGCAGCATTGTTGGGAGTGGGAGAGTGTGGCTTGGAAGAGCATGGGGAGCCTATGCCACTGTGGTATTCTCAAGAACATACATGTCTGATGTCGTAGCTCCTGATGGATGGAATGATTGGAGAGATCCCTCTAGAGACCAGAGTGTCTTCTTTGGGGAGTACCGTTGTCTTGGACCTGGAGCAAATTATACATCCAGAGTCCCTTATGCCAAGCAACTCAGGGATTACGAAGCAAACTCCTACACGAATATTTCGTACATTGATGGAACTGATTGGCTTCTTGATTATTTTCAAAACTATGTTAACCCTTCATATATCTAA 1233 0.4347 MGFNRTLFWLSVFVIFLFSIIFVLYTTPPSPAANTAISPQDSFSFQIGIFSKIIKLSGAEHFMSLITSIARRRHHHRRSHKEKCDRSKWDSKLIQDYNVSLVLTVDLKGCANFSSVQKAVDAVPESSSDTTLIIIDSGTYREKVVVQANKTNLIVQGQGYLNTTIEWNDTANSTGGTSYSYSFAVFASKFTAYNISFKNTAPPPSPGVVGAQAVALRVTGDQAAFYGCGFYGAQDTLNDDGGRHYFKECFIQGSIDFIFGNARSLYEDCTINCVAKEEKDGISGSITAQGRQSMNEESGFSFVNCSIVGSGRVWLGRAWGAYATVVFSRTYMSDVVAPDGWNDWRDPSRDQSVFFGEYRCLGPGANYTSRVPYAKQLRDYEANSYTNISYIDGTDWLLDYFQNYVNPSYI* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1555 410 PANTHER PECTINESTERASE 14-RELATED 11 403 - -
Gso19g1555 410 Gene3D - 97 404 IPR012334 -
Gso19g1555 410 SUPERFAMILY Pectin lyase-like 100 397 IPR011050 -
Gso19g1555 410 Pfam Pectinesterase 104 393 IPR000070 GO:0030599|GO:0042545
Gso19g1555 410 ProSitePatterns Pectinesterase signature 2. 251 260 IPR033131 -
Gso19g1555 410 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 11 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1555 Gso-Chr19 44498453 44501759 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1555 96 397 Carbohydrate Esterase AT1G05310 56.066 1.13e-121 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1555 - - gmx:100802034 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1555 19 44498453 44501759 Gso13g1124 13 25854609 25856935 PCT
Gso13g1124 13 25854609 25856935 Gso19g1555 19 44498453 44501759 PCT