Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1548 ATGACCACCACACTCTTGCTCTTTCTTGTTGCATTTTCACTAATTCCTAATGTCCATGCAACGATTAGGTCCTCATGGGGACATGCTGCTCATAACATGGTTGGAAGAGATAACAAGATAGTTGACCTCCACAAGCATCACCCCGTTTTTGGGCCTGGCCCTTGGAGGCAAGCTTATGCTACTTTCTATGAGGGAGGCTCTGGAACATTTGGAGGAGCTTGTGGGTATGATGATGTGGTTAAAGATGGTTATGGGCTTGACACGGCAGCATTGAGCTCAGTTTTGTTCAAGCACGGTGAGGCATGTGGGGCATGTTACGAGATCAAATGTGTAAACTCTACTCAATGGTGTAAGCCAAAACCCTCTGTTTTTGTGACAGCAACCAACCTTTGCCCCCCCAATTATTCTCAACCAGGTGACAATGGAGGATGGTGCAACCCTCCACGCCAGCACTTTGATTTAGCCAAACCTGCTTATCTCAAAATTGCACAGTACAAGGCTGGCATCGTCCCAGTCCAATATCGCAGGGTACCATGCAAGAAGCAAGGGGGTATTCGGTTCACAATCACTGGGAATCCTTACTTCAACCTAGTAAAAGTGTGGAATGTGGGAGGAGCTGGGGACATCACAGAAGTACAGGTGAAGGGTGACAAGAAGCTGATCAATTGGACAAATTTGAAGCGAAATTGGGGTGAGAAATGGGAGACTAATGCCATGTTAGTGGGAGAGACATTGACTTTTAGGGTTAAAGCCAGTGATGGCAGGTACTCTACCTCTTCCAGTGTTGCCCCCAAGAATTGGCAGTTTGGTCAAACCTTTGAAGGCAAAAACTTCCCATAA 840 0.4667 MTTTLLLFLVAFSLIPNVHATIRSSWGHAAHNMVGRDNKIVDLHKHHPVFGPGPWRQAYATFYEGGSGTFGGACGYDDVVKDGYGLDTAALSSVLFKHGEACGACYEIKCVNSTQWCKPKPSVFVTATNLCPPNYSQPGDNGGWCNPPRQHFDLAKPAYLKIAQYKAGIVPVQYRRVPCKKQGGIRFTITGNPYFNLVKVWNVGGAGDITEVQVKGDKKLINWTNLKRNWGEKWETNAMLVGETLTFRVKASDGRYSTSSSVAPKNWQFGQTFEGKNFP* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1548 279 SMART dpbb_1 88 174 IPR007112 -
Gso19g1548 279 Pfam Expansin C-terminal domain 185 264 IPR007117 -
Gso19g1548 279 PRINTS Expansin/Lol pI family signature 54 69 IPR007118 GO:0005576
Gso19g1548 279 PRINTS Expansin/Lol pI family signature 92 110 IPR007118 GO:0005576
Gso19g1548 279 PRINTS Expansin/Lol pI family signature 167 183 IPR007118 GO:0005576
Gso19g1548 279 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Gso19g1548 279 PRINTS Expansin/Lol pI family signature 261 275 IPR007118 GO:0005576
Gso19g1548 279 PANTHER EXPANSIN-A32 31 278 - -
Gso19g1548 279 PANTHER EXPANSIN-A15 31 278 IPR002963 GO:0009664
Gso19g1548 279 Gene3D - 183 278 IPR036749 -
Gso19g1548 279 PRINTS Expansin signature 83 97 IPR002963 GO:0009664
Gso19g1548 279 PRINTS Expansin signature 110 121 IPR002963 GO:0009664
Gso19g1548 279 PRINTS Expansin signature 123 133 IPR002963 GO:0009664
Gso19g1548 279 PRINTS Expansin signature 142 159 IPR002963 GO:0009664
Gso19g1548 279 PRINTS Expansin signature 159 172 IPR002963 GO:0009664
Gso19g1548 279 PRINTS Expansin signature 183 195 IPR002963 GO:0009664
Gso19g1548 279 PRINTS Expansin signature 195 216 IPR002963 GO:0009664
Gso19g1548 279 PRINTS Expansin signature 232 253 IPR002963 GO:0009664
Gso19g1548 279 PRINTS Expansin signature 261 277 IPR002963 GO:0009664
Gso19g1548 279 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 194 275 IPR007117 -
Gso19g1548 279 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 71 184 IPR007112 -
Gso19g1548 279 Gene3D - 39 180 IPR036908 -
Gso19g1548 279 SUPERFAMILY PHL pollen allergen 181 275 IPR036749 -
Gso19g1548 279 Pfam Lytic transglycolase 88 174 IPR009009 -
Gso19g1548 279 SUPERFAMILY Barwin-like endoglucanases 54 202 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1548 Gso-Chr19 44417135 44419061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1548 49 278 Expansin Gene Family AT3G55500 64.378 2.75e-110 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1548 - - gmx:100800424 601.668