Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1545 ATGGGTTTGCTTCAAAGCCAACCGAATCTCACTCGTTTCCTCGCCTCCTCATGCTTGACATTGCATCTTTCTCTCTCTCTTTCTTCACTTCACACCTGTAATATAAGACTTCCAAGTTTGGAAACGCAACTCTGGCAAACCCAAAATACGTTACTAGCTATTAGAGGTGCCATTATTTACATCAGCTTCCACTCTCTTCATTGCTTCTTCCATTCTCTCTTTACCATGCAAAAGCAAGAGGAATTACATGCGGTGTGCAAGGATTACATGCAAATCATCAAGGGCAAGCGCACCAAGCGACAAAGGCTTCCATCCCCACTTAGGTTAACCATGTCAACAACATGTTCCAGTTTAGGAAGAAGCAGCACCGACAACTCCGTAGGTTTTGATATTCCAACAACCTCAAATGAATCAAGGAACGAAGAGGAGGACATGGCAAATTGTTTGATTCTCTTAGCTCAAGGTCACAACAATACTCCAAAACCCTCACGCACCAACAAGGGAGGGTTATACCTTTACGAGTGCAAGACTTGTAACCGATGCTTCCCTTCATTTCAAGCCCTTGGTGGCCACAGAGCCAGCCACAAGAAATATTCCAAGGCAAGTGCAGAAGAAAAGCAAGGAGTTGCAACTACTTTTGTGAATTATGAAGTCGATAATAATAATAATAATCATAATCATGATGATTATTGTGACCCCACAAGCACCCCCCTCACCTTACAATTATCAACGGCTTTGTATAATAATAGCAGCAGCATTAGGAGTACTATTAATGCTAAAGCTAAAGTTCATGAGTGTTCCATATGTGGGGCAGAATTTTCATCTGGGCAAGCGTTGGGGGGACACATGAGAAAGCATAGAAATTTTCTGAGTGCACCTATTATTGGGGCAATTAATATTGCAAATGGTGGTGATGGAAGCCCTAAAGTTCCGGAAGCCAAGAAACACAAAGATGTTTTGAACTTGGACTTGAATCTTCCGGCACCTGAGGATGATCATCTCAGAGAATCCAACTTGTTTCCTTTTCAGGCCAAAGAAAAAGTTATTGTCTTCTCAGCAACTTCTTTGGTGGATTGCCATTACTAA 1086 0.4208 MGLLQSQPNLTRFLASSCLTLHLSLSLSSLHTCNIRLPSLETQLWQTQNTLLAIRGAIIYISFHSLHCFFHSLFTMQKQEELHAVCKDYMQIIKGKRTKRQRLPSPLRLTMSTTCSSLGRSSTDNSVGFDIPTTSNESRNEEEDMANCLILLAQGHNNTPKPSRTNKGGLYLYECKTCNRCFPSFQALGGHRASHKKYSKASAEEKQGVATTFVNYEVDNNNNNHNHDDYCDPTSTPLTLQLSTALYNNSSSIRSTINAKAKVHECSICGAEFSSGQALGGHMRKHRNFLSAPIIGAINIANGGDGSPKVPEAKKHKDVLNLDLNLPAPEDDHLRESNLFPFQAKEKVIVFSATSLVDCHY* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1545 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 200 IPR013087 -
Gso19g1545 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 264 286 IPR013087 -
Gso19g1545 361 SUPERFAMILY beta-beta-alpha zinc fingers 172 286 IPR036236 -
Gso19g1545 361 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 57 360 - -
Gso19g1545 361 ProSitePatterns Zinc finger C2H2 type domain signature. 175 195 IPR013087 -
Gso19g1545 361 Pfam C2H2-type zinc finger 173 197 - -
Gso19g1545 361 Pfam C2H2-type zinc finger 263 287 - -
Gso19g1545 361 ProSitePatterns Zinc finger C2H2 type domain signature. 266 286 IPR013087 -
Gso19g1545 361 Gene3D Classic Zinc Finger 170 286 - -
Gso19g1545 361 PANTHER ZINC FINGER PROTEIN ZAT5 57 360 - -
Gso19g1545 361 SMART c2h2final6 264 286 IPR013087 -
Gso19g1545 361 SMART c2h2final6 173 195 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1545 Gso-Chr19 44387077 44388396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1545 76 361 C2H2 Transcription Factor Family AT2G28200 41.905 5.17e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso19g1545 zf-C2H2_6 3.2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1545 - - gsj:114399832 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1545 19 44387077 44388396 Gso3g1568 3 41613824 41614942 GST
Gso19g1545 19 44387077 44388396 Gso10g0513 10 5644504 5645708 PCT
Gso10g0513 10 5644504 5645708 Gso19g1545 19 44387077 44388396 PCT