Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1530 ATGGGTAGAGCTCCTTGTTGTGACAAGGCAAATGTAAAGAAAGGGCCATGGTCACCAGAAGAAGATGCAAAGCTAAAGGACTACATAGAGCAACATGGCACTGGAGGCAATTGGATTGCGCTTCCACAAAAAGTTGGTTTGAAAAGATGTGGAAAGAGTTGTAGACTAAGGTGGCTTAATTATCTTAGACCCAACATTAAGCATGGTCAATTCTCTGAAGCAGAAGATAAAATAATCTGTAGCCTCTTTGCTAGCATTGGAAGCAGGTGGTCCATAATAGCATCTCAGTTGCCGGGGAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTTAAGAAGAAAATGATGGCCATGAATCCTTCACTCCAAAGGAAGCCTCAACAAATTACCCTTTTATCCATCCTTCAAAGTTCAGCATATTCATCACCATCGTCATTCAGAGACAGTAACAACATCTCATACTACCACCCTCACGGTTCCTTTTCCTACTCGTCAAATCTTCTGAGTGGTAACAACACTTCTGCTTCTGCTAATTCCTTCTTTCAAGCACAAGAGAGTTTCATTGACCCCACTCAGAAGTGCCAATTCAAAGATAGCAGCAACAATAGCATGTTTTTGTTTGGTGGTGAAGCCACAGCCACAGCCACTAGTTGCAGCTCTTCTGATGGGAGCTGCAACAACCAGATAAGCCATGTCATAGAGCCAGAGTTTGGTGATGCAAGTTTTGTTGGTGGGGCTAATAATAATATTCACCCCTACAGTGGGGTGCTGGAAGATAATAATACTCAGAAGTTGATGATGTTCTCCAATGCTGGTGGTAGTGGTAGTGTTAGTGGGTGGACAGACAAACAAAATGGATTATTATGGGAACAAAATCCATTGGATTATGGTCTAGATGAAATTAAACAGCTAATTAGCACTAATAACAGTTGCAACAACTTTTTGTTTGATGACAAGAAGACACAAGAAAGAGTCACTTACTTCTGA 993 0.4139 MGRAPCCDKANVKKGPWSPEEDAKLKDYIEQHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSEAEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMAMNPSLQRKPQQITLLSILQSSAYSSPSSFRDSNNISYYHPHGSFSYSSNLLSGNNTSASANSFFQAQESFIDPTQKCQFKDSSNNSMFLFGGEATATATSCSSSDGSCNNQISHVIEPEFGDASFVGGANNNIHPYSGVLEDNNTQKLMMFSNAGGSGSVSGWTDKQNGLLWEQNPLDYGLDEIKQLISTNNSCNNFLFDDKKTQERVTYF* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1530 330 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gso19g1530 330 PANTHER OS09G0431300 PROTEIN 1 222 - -
Gso19g1530 330 PANTHER OS09G0431300 PROTEIN 1 222 - -
Gso19g1530 330 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Gso19g1530 330 Gene3D - 7 68 - -
Gso19g1530 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Gso19g1530 330 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Gso19g1530 330 Gene3D - 69 132 - -
Gso19g1530 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Gso19g1530 330 CDD SANT 16 62 IPR001005 -
Gso19g1530 330 SMART sant 13 64 IPR001005 -
Gso19g1530 330 SMART sant 67 115 IPR001005 -
Gso19g1530 330 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Gso19g1530 330 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1530 Gso-Chr19 44224527 44226622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1530 1 127 MYB Transcription Factor Family AT5G57620 82.677 7.08e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso19g1530 Myb_DNA-binding 5.7e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1530 19 44224527 44226622 Gso3g1549 3 41416811 41418920 GST
Gso19g1530 19 44224527 44226622 Gso10g0468 10 5086016 5088382 PCT
Gso10g0468 10 5086016 5088382 Gso19g1530 19 44224527 44226622 PCT