Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1529 ATGTCAAAAGATTCTGAGGAGATAAAAACCATTGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGAACTTGTTCCAGAGGAGGGTGGTGCAGCTGCACCTTCACAACACCAAGTTCCAAGGGAAATGAACACTTCTGAACCACCCAACAAAGATGTTGGTGCTTCTTCTGCAGCAGTTACTAGTAACGGTGGTGGGGAGAAGAAAGAGAAAGAGAGTGTTCCCTCTGTTGGGTTTGGAGAGCTTTTCAGATTCGCTGATGGGTTGGATTATGTTCTCATGGGAATTGGGACGGTCGGAGCAGTTGTGCACGGTTGTTCTCTGCCTCTCTTTCTTCGCTTCTTTGCGGATCTTGTCAATTCCTTTGGCTCCAATGCTAATGATGTCGACAAGATGACTCAGGAAGTGGTCAAGTATGCATTTTACTTCTTGGTGGTGGGGGCTGCTATATGGGCTTCTTCATGGGCAGAGATTTCGTGTTGGATGTGGAGCGGGGAGCGGCAATCGACCAAGATGAGAATCAAGTATCTGGAGGCTGCCTTAAACCAGGACATTCAGTTCTTCGACACCGAGGTTAGGACATCCGACGTTGTTTTCGCAATCAACACCGATGCTGTCATGGTCCAGGATGCCATTAGTGAGAAGTTGGGGAATTTCATTCACTACATGGCTACCTTTGTTTCTGGTTTTGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCTTTGGTCACTCTTGCTGTTGTCCCTATGATAGCTGTGATTGGAGGCATTCACACCACCACCTTGGCTAAGCTCTCTGGTAAGAGCCAGGAAGCTCTTTCTCAAGCTGGCAACATTGTGGAACAGACGATTGCACAAATCCGGGTAGTGCTGGCCTTTGTTGGGGAGTCCAGAGCATTGCAGGCCTATTCATCAGCCTTGAGAGTTGCACAGAAGATTGGCTACAAAACTGGGTTTGCAAAGGGAATGGGATTGGGTGCCACTTACTTTGTTGTTTTTTGCTGTTACGCGCTTCTGTTGTGGTATGGAGGCTATCTGGTTAGGCACCACGCCACCAACGGAGGACTTGCCATTGCAACCATGTTTGCTGTTATGATTGGTGGATTGGGTTTGGGGCAATCCGCACCAAGCATGGCTGCATTTACGAAGGCCAGAGTTGCTGCTGCGAAGATTTTCCGTATAATTGATCACAAGCCAAGTATTGATCAAAATAGCGAATCTGGCGTTGAACTAGACACAGTTACTGGACTTGTGGAGCTGAAAAACGTGGACTTTTCTTACCCATCTAGGCCAGAGGTTCAGATCCTCAATGACTTCTCCTTGAATGTGCCTGCTGGCAAGACCATAGCTTTGGTGGGTAGCAGTGGCTCTGGAAAGAGCACTGTTGTCTCCCTCATTGAGAGATTCTATGACCCAACTTCAGGGCAAGTTCTGCTAGATGGGCATGACATTAAAACTTTGAGGCTTAGATGGCTGAGGCAGCAGATAGGACTAGTGAGTCAAGAACCTGCTTTGTTTGCTACCACAATACGAGAAAATATACTGTTGGGTAGGCCTGATGCAGACCAGGTTGAGATTGAAGAAGCTGCCAGGGTTGCTAATGCTCATTCCTTCATCATTAAACTTCCTGATGGCTATGAAACCCAGGTAGGAGAAAGAGGGCTGCAACTTTCTGGAGGGCAAAAACAGAGAATAGCAATAGCAAGGGCAATGCTGAAAAACCCTGCAATTCTTCTCCTAGACGAAGCAACGAGTGCATTGGACTCGGAGTCAGAAAAGCTTGTGCAAGAAGCCCTTGACCGGTTCATGATTGGCAGAACAACTCTCATAATTGCTCATCGTCTCTCCACAATTCGCAAAGCTGACCTTGTAGCTGTACTTCAGCAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAGCTCTTCTCGAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCTCATGAAACTGCCATGAATAATGCCAGAAAGAGTAGTGCAAGGCCGTCGAGTGCCAGAAACTCTGTAAGCTCACCAATAATTGCTAGGAATTCTTCTTATGGACGGTCACCATACTCGCGTAGGCTATCCGATTTCTCTACATCTGACTTTAGTCTGTCCCTTGATGCATCACATCCTAGTTATAGGCTCGAAAAGCTTGCTTTCAAAGAGCAAGCCAGTTCCTTCTGGAGACTTGCAAAAATGAACTCTCCTGAATGGCTTTATGCTTTAATTGGCTCTATAGGGTCTGTAGTTTGTGGATCCCTTAGTGCCTTCTTTGCTTATGTTCTTAGTGCTGTCCTCAGTGTGTATTACAATCCAGACCACAGATACATGATCCGTGAAATAGAAAAGTACTGCTACTTGTTGATTGGCCTTTCATCAACTGCACTTCTCTTCAACACATTGCAACACTTCTTCTGGGACATTGTCGGGGAAAACCTTACGAAACGTGTGAGAGAGAAAATGCTGACAGCAGTGCTCAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCCAGGATTGCTGCAAGGCTGGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATCGAATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCCTGTACTGCTGGGTTTGTGTTGCAGTGGCGCCTTGCCCTTGTCCTCGTTGCTGTCTTTCCTGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTTTCTGGGGACCTGGAAGCTGCTCATGCCAAGGCTACACAACTTGCAGGAGAAGCTATAGCCAATGTAAGGACTGTTGCAGCCTTCAATTCAGAAAAAAAAATTGTTGGCCTTTTCACCACCAATCTCCAAGCTCCACTACAGCGTTGTTTTTGGAAGGGACAAATTTCTGGAAGTGGATATGGTGTAGCTCAGTTTGCACTTTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTGGTGAAGCATGGCATCTCTGACTTCTCTAAAACAATCAGAGTTTTTATGGTCCTAATGGTTTCTGCAAATGGTGCTGCTGAAACTTTAACACTGGCCCCTGACTTTATCAAAGGAGGCCGAGCCATGAGGTCAGTGTTTGATCTCCTTGACCGCAGAACTGAAATTGAGCCTGATGATCAAGATGCTACTCCTGTTCCTGATCGTCTTCGTGGTGAAGTTGAACTTAAGCATGTAGACTTCTCTTATCCAACTCGCCCGGATATGCCAGTTTTTCGTGACCTCAGTCTTCGTGCGAAGGCTGGTAAAACTCTTGCCCTTGTAGGACCTAGTGGCTGTGGTAAGAGCTCAGTTATTGCACTTATACAAAGATTCTATGATCCAACATCTGGTCGGGTCATGATTGATGGCAAGGACATCAGGAAATACAACCTCAAGTCCTTAAGAAGGCACATTTCTGTGGTACCACAGGAGCCTTGTTTGTTTGCCACTACTATTTATGAAAACATTGCTTATGGACATGAGTCAACCACTGAAGCTGAGATAATTGAAGCTGCAACTCTTGCCAATGCACACAAGTTCATATCTGGTTTGCCAGATGGATACAAAACATTTGTGGGGGAGAGAGGTGTTCAACTGTCCGGGGGACAAAAGCAAAGAATAGCAGTTGCTCGGGCTTTTGTGAGGAAGGCTGAACTTATGCTTCTTGATGAGGCCACAAGTGCACTTGATGCTGAATCTGAGAGGTCTGTTCAGGAGGCTCTAGACCGCGCCTCCTCAGGAAAAACAACTATCATTGTTGCACACAGGCTATCAACAATCAGGAATGCCAATCTGATTGCTGTGATTGATGACGGGAAAGTAGCTGAGCAAGGCTCACATTCTCAGTTGTTGAAAAATCACCCGGATGGGATTTATGCGCGCATGATTCAGTTACAAAGGTTCACCCACAGCCAAGTTATTGGAATGGCCTCAGGTTCAAGCTCTTCAACAAGACCGAAAGACGACGAAAGAGAAGGCTAG 4020 0.4609 MSKDSEEIKTIEQWKWSEMQGLELVPEEGGAAAPSQHQVPREMNTSEPPNKDVGASSAAVTSNGGGEKKEKESVPSVGFGELFRFADGLDYVLMGIGTVGAVVHGCSLPLFLRFFADLVNSFGSNANDVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWSGERQSTKMRIKYLEAALNQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTTTLAKLSGKSQEALSQAGNIVEQTIAQIRVVLAFVGESRALQAYSSALRVAQKIGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPSIDQNSESGVELDTVTGLVELKNVDFSYPSRPEVQILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLRLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHSFIIKLPDGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLIIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEMAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPSYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPDHRYMIREIEKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSEKKIVGLFTTNLQAPLQRCFWKGQISGSGYGVAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDQDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLSLRAKAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHESTTEAEIIEAATLANAHKFISGLPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESERSVQEALDRASSGKTTIIVAHRLSTIRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTHSQVIGMASGSSSSTRPKDDEREG* 1340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1529 1339 CDD ABC_6TM_Pgp_ABCB1_D1_like 94 391 - -
Gso19g1529 1339 MobiDBLite consensus disorder prediction 1320 1339 - -
Gso19g1529 1339 CDD ABC_6TM_Pgp_ABCB1_D2_like 739 1055 - -
Gso19g1529 1339 MobiDBLite consensus disorder prediction 25 72 - -
Gso19g1529 1339 ProSitePatterns ABC transporters family signature. 1212 1226 IPR017871 GO:0005524
Gso19g1529 1339 Gene3D - 1064 1319 IPR027417 -
Gso19g1529 1339 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 94 1316 IPR039421 -
Gso19g1529 1339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1064 1312 IPR027417 -
Gso19g1529 1339 SUPERFAMILY ABC transporter transmembrane region 81 402 IPR036640 GO:0005524|GO:0016021
Gso19g1529 1339 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 96 383 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g1529 1339 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1073 1309 IPR003439 GO:0005524
Gso19g1529 1339 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 94 1316 - -
Gso19g1529 1339 CDD ABC_MTABC3_MDL1_MDL2 1073 1312 - -
Gso19g1529 1339 SUPERFAMILY ABC transporter transmembrane region 737 1057 IPR036640 GO:0005524|GO:0016021
Gso19g1529 1339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 657 IPR027417 -
Gso19g1529 1339 CDD ABC_MTABC3_MDL1_MDL2 418 657 - -
Gso19g1529 1339 Gene3D - 416 681 IPR027417 -
Gso19g1529 1339 Pfam ABC transporter 1092 1240 IPR003439 GO:0005524
Gso19g1529 1339 Pfam ABC transporter 436 585 IPR003439 GO:0005524
Gso19g1529 1339 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 750 1037 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g1529 1339 MobiDBLite consensus disorder prediction 38 63 - -
Gso19g1529 1339 Pfam ABC transporter transmembrane region 95 368 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g1529 1339 Pfam ABC transporter transmembrane region 751 1020 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gso19g1529 1339 SMART AAA_5 1100 1292 IPR003593 -
Gso19g1529 1339 SMART AAA_5 445 631 IPR003593 -
Gso19g1529 1339 ProSitePatterns ABC transporters family signature. 557 571 IPR017871 GO:0005524
Gso19g1529 1339 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 418 654 IPR003439 GO:0005524
Gso19g1529 1339 Gene3D ABC transporter type 1, transmembrane domain 141 1046 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1529 Gso-Chr19 44192861 44199932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1529 67 1334 Calmodulin-binding Proteins AT2G36910 89.598 0.0 2330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1529 K05658 - gmx:100814667 2530.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1529 19 44192861 44199932 Gso3g1548 3 41388069 41394752 GST