Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1520 ATGATATGGTTATTTGATGCTATCAAGTCAGAAGGAATGAAGTGTTTTCCATTCTCCTATGGAGAGAAGAAAGATGAACCGAAAGGCTTGCAGTTGCAGTCAACATCGGGTCGATCAGACAATTCCACATGTGTTGAGGCTGAGGTTAGAAGATCTGGTTCTGCATTAAATTCTCAGGATGTTTCAGACAATGGCAGCTCAGAATCTCTCAGGAGGAATGCGATTCCCAGTTTGTCCCAGAGACCCTGCAACCTCAGAGTGTTTACTGTATCTGAACTGAAATCAGCCACAAAGAATTTCAGTCGCTCTGTTATGATCGGAGAGGGTGGGTTTGGGTGTGTCTACCTGGGATTGATAAGAAGTGCGGAGGACCCCTCCAGAAGAACTGAAGTCGCAGTTAAACAACTTAGTAAAAGAGGAATGCAGGGCCATAGGGAATGGGTAACAGAAGTGAATGTTCTGGGCATTGTTGAGCATCCCAATCTTGTGAAACTAGTGGGTTACTGTGCTGATGATGATGAGAGAGGAATCCAGCGGCTTCTGATTTATGAATACATGCCAAACAGAAGTGTGGAACACCATTTATCTCACCGATCAGAGACTCCTCTCCCATGGAGTAGGAGATTAAAAATAGCTCGAGATGCAGCTAGTGGGTTAACATACCTGCACGAGGAAATGGATTTCCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTATTGGATGAACAGTGGAATGCTAAGCTATCAGACTTTGGGTTAGCAAGGTTGGGACCATCAGATGGACTGACTCATGTCTCAACAGCGGTTGTAGGAACAATGGGATATGCAGCTCCTGAATATGTTCAAACTGGACGTCTAACATCAAAGAATGATGTATGGAGCTACGGTGTCTTCCTTTATGAACTCATAACTGGTAGGCGCCCTTTAGATCGAAATCGCCCCAGGGGTGAGCAGAAGCTGTTGGAATGGATAAGGCCATACCTATCAGATGGGAAGAAATTTCAACTAATATTAGATCCAAGACTTGATAAGAAACAAGTCTTCAAGTCAGCCCAGAGACTTGCTACGATAGCTAACCGATGCTTGGTAAAAAATCCAAAGAATCGTCCAAAGATGAGTGAGGTATTGGAAATGGTGAATGGAATGGTAGAATCCATATCCAGTTCTAGTCCACAGTTGCCCCTGAGGAGTGTGGCAACATTGGAAGCTTCCCAGGATACTGAAACAAACAACAAGAAACGAACCATGGATCATAAGCCTGGAGAAAGTAATTGGTTTGTTAGGATGTGGAGACCAAAGCTTGTAAGAACATGTTGA 1323 0.4346 MIWLFDAIKSEGMKCFPFSYGEKKDEPKGLQLQSTSGRSDNSTCVEAEVRRSGSALNSQDVSDNGSSESLRRNAIPSLSQRPCNLRVFTVSELKSATKNFSRSVMIGEGGFGCVYLGLIRSAEDPSRRTEVAVKQLSKRGMQGHREWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEHHLSHRSETPLPWSRRLKIARDAASGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYVQTGRLTSKNDVWSYGVFLYELITGRRPLDRNRPRGEQKLLEWIRPYLSDGKKFQLILDPRLDKKQVFKSAQRLATIANRCLVKNPKNRPKMSEVLEMVNGMVESISSSSPQLPLRSVATLEASQDTETNNKKRTMDHKPGESNWFVRMWRPKLVRTC* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1520 440 PANTHER KINASE 1B 15 435 - -
Gso19g1520 440 SUPERFAMILY Protein kinase-like (PK-like) 77 381 IPR011009 -
Gso19g1520 440 CDD STKc_IRAK 106 384 - -
Gso19g1520 440 Gene3D Phosphorylase Kinase; domain 1 81 185 - -
Gso19g1520 440 Pfam Protein tyrosine and serine/threonine kinase 105 379 IPR001245 GO:0004672|GO:0006468
Gso19g1520 440 MobiDBLite consensus disorder prediction 23 73 - -
Gso19g1520 440 ProSiteProfiles Protein kinase domain profile. 100 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1520 440 PANTHER OS01G0588500 PROTEIN-RELATED 15 435 - -
Gso19g1520 440 Gene3D Transferase(Phosphotransferase) domain 1 186 396 - -
Gso19g1520 440 ProSitePatterns Protein kinases ATP-binding region signature. 106 134 IPR017441 GO:0005524
Gso19g1520 440 MobiDBLite consensus disorder prediction 30 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1520 Gso-Chr19 44076244 44080470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1520 13 396 Glycoside Hydrolase AT3G07070 40.561 3.52e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso19g1520 Pkinase 4.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1520 - - gsj:114400704 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1520 19 44076244 44080470 Gso3g1536 3 41269621 41274381 GST
Gso19g1520 19 44076244 44080470 Gso10g0495 10 5384026 5388421 PCT