Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1511 ATGCTATTTCAGGAATTTGCAGTGAGAACAGGTTACTGTATGATGGAGTCAAAGGAGAAATTGAAAGAGGTGGAGAAGTGTTTGGATTCTCGGCTATGGCATGCGTGTGCGGGAGGGATGGTTCAAATGCCAGTGGTGAATGCTAAGGTGTTCTACTTTCCTCAGGGTCATGCTGAACATGCATGTGGACCCGTGGACTTCAGGGTTTATCCCAAAATTCCACCTTTCATTCAATGCAAAGTTGGAGCTATCAAATACATGGCTGATCCTGAAACTGATGAGGTTTATGTAAAGCTTAGGCTTGTTCCTTTGACCAGAAACGAGGGTGATTTTGAGGATGATGCTGTTGGAGGCATCAATGGATCTGAAAATAAAGATAAATCCCCTTCTTTTGCCAAAACCTTGACACAGTCTGATGCCAACAATGGTGGGGGCTTTTCTGTTCCCAGATATTGTGCTGAGACAATTTTTCCTCGGTTGGACTATTCCGCGGACCCTCCCGTTCAGAACATCCTTGCCAAGGATGTTCATGGTGAGACATGGAAATTTAGGCACATTTATAGGGGCACGCCGCGCCGGCACTTGTTAACTACCGGGTGGAGTAGCTTTGTGAATCACAAGAAGCTTGTGGCGGGGGATTCAATTGTGTTTTTGAGGGCAGAAAAGGATGATCTGCGTGTTGGAATTCGGCGGGCTAAGAGGGGGATTGGAATTGGTGGAGGACCTGAGGCTCCTGCAGGGTGGAATTCAGGTGGGGGGATTCGTCCTATGCCTTATGGAGGGTTTTCAGCTTTTTTGAGAGAGGAAGATAGCCAGCTCTTGAGAAATGGGTTGAGTCCAAATGCAAAGGGGAAAGTGAGGCCTGAAGCAGTTATTGAGGCTGCAACTCTTGCTGCCAATATGCAGCCATTTGAGGTTGTTTACTATCCCCGGGCAAGTGCCCCAGAGTTTTGTGTGAAGGCCAATTTAGTTAGAGCCGCATTGCAGGTTAGGTGGTGTCCTGGAATGAGGTTCAAGATGCCCTTTGAAACAGAGGACTCCTCGCGGATAAGCTGGTTTATGGGAACCATCTCTTCTGTTAACTTTGCTGATCCAAGATGGCCCAACTCTCCTTGGAGACTTCTCCAGGTTACATGGGATGAACCAGAGTTACTTCAAAATGTAAAAAGGGTGAGCCCGTGGCTGGTTGAAATTGTATCAAACATGCCTACCATTCATCTTTCCCATTACTCAACACAACAAAAGAAGCCAAGATTCCCTCAACACCCGGATTTTTCTTTTGATGGTCAGATTTCATTGCCAGCATTTCCCAGCAACTTTCTAGGTCCAAGCAATCCGTTTGGTTGTCTAGCTGAAAGTACTCCTGCTGGCATACAGGGAGCCAGGCATGCTAATTATGGTATATCCCTATCAAATCTCCACTTCAATAAACTGCAGTCAGGCCTATTTCAAGCTGGTTTCCCTCCACTTGATCACACTGCTTCCCCAGTATTGAGAGTCTCCTCCAACAATGCAGCAACAATGCAAAAGGTCGGCACGGGTGACAACGTCTCTTGCTTACTGTCCATGTCAACTGCTACTCAACCTTCAAAGAAAGTGGATGATGTGAAGGCACCCCAATTGGTGCTTTTTGGCCAAACAATTCTCACCGAACAGCAAATTTCTTTGAACACCTCTGCTAAGACAGATCCTACTCGAAATAATTCATTTGATGGAAATGCTGATAAAATGTGCAAGTTTTCAGATGGTTTTGGTTATGCTCTTCACCCACAAGGCTCTTCTCTTGAGAGGTTACAGTGGTACAAGGATCAACAAAAAGAAACCATGGCTAGTTTGGAGACAGGTCACTGTAAAGTTTTTATGGAATCTGAAGACATTGGTCGGACTATGGATCTCACAATGCTTGGATCTTATGATGAATTGTATAGAAAGCTGGCAGACATGTTTGGCATAGAAAAATCTGTGGTGCTAAGTCACATGCTTTACCGTGATACAACTGGGGCAGTCAAGCACATTGGAGATGAAGCATTCAGCGAATTTACCAAAACTGCAAGGAGGTTGACCATTCTAATGGATTCCAACAGCGATGGTAGAGGAATCTAG 2103 0.4541 MLFQEFAVRTGYCMMESKEKLKEVEKCLDSRLWHACAGGMVQMPVVNAKVFYFPQGHAEHACGPVDFRVYPKIPPFIQCKVGAIKYMADPETDEVYVKLRLVPLTRNEGDFEDDAVGGINGSENKDKSPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNHKKLVAGDSIVFLRAEKDDLRVGIRRAKRGIGIGGGPEAPAGWNSGGGIRPMPYGGFSAFLREEDSQLLRNGLSPNAKGKVRPEAVIEAATLAANMQPFEVVYYPRASAPEFCVKANLVRAALQVRWCPGMRFKMPFETEDSSRISWFMGTISSVNFADPRWPNSPWRLLQVTWDEPELLQNVKRVSPWLVEIVSNMPTIHLSHYSTQQKKPRFPQHPDFSFDGQISLPAFPSNFLGPSNPFGCLAESTPAGIQGARHANYGISLSNLHFNKLQSGLFQAGFPPLDHTASPVLRVSSNNAATMQKVGTGDNVSCLLSMSTATQPSKKVDDVKAPQLVLFGQTILTEQQISLNTSAKTDPTRNNSFDGNADKMCKFSDGFGYALHPQGSSLERLQWYKDQQKETMASLETGHCKVFMESEDIGRTMDLTMLGSYDELYRKLADMFGIEKSVVLSHMLYRDTTGAVKHIGDEAFSEFTKTARRLTILMDSNSDGRGI* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1511 700 ProSiteProfiles PB1 domain profile. 614 694 IPR000270 GO:0005515
Gso19g1511 700 Gene3D - 331 404 - -
Gso19g1511 700 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 691 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso19g1511 700 Pfam Auxin response factor 294 376 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso19g1511 700 Pfam B3 DNA binding domain 131 232 IPR003340 GO:0003677
Gso19g1511 700 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Gso19g1511 700 MobiDBLite consensus disorder prediction 113 138 - -
Gso19g1511 700 SMART B3_2 131 233 IPR003340 GO:0003677
Gso19g1511 700 CDD B3_DNA 129 231 IPR003340 GO:0003677
Gso19g1511 700 Gene3D - 129 233 IPR015300 -
Gso19g1511 700 Gene3D - 611 696 - -
Gso19g1511 700 PANTHER AUXIN RESPONSE FACTOR 16 691 - -
Gso19g1511 700 SUPERFAMILY DNA-binding pseudobarrel domain 124 233 IPR015300 -
Gso19g1511 700 MobiDBLite consensus disorder prediction 123 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1511 Gso-Chr19 43956892 43960995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1511 24 696 B3 DNA Binding Superfamily AT4G30080 57.681 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso19g1511 B3 4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1511 - - gmx:100791442 1411.74