Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1509 ATGGCCAAAGACCTCGAAACGGAGATTCAAAGTGGGTTGCCTCACAAGGACTACCACGACCCACCCCCCGCCCCATTCTACGACCCCGCCGAGCTCCGAAAGTGGTCCTTCTTCCGAGCCCTCATCGCCGAGTTCGTCGCCACCCTCCTCTTCCTCTACGTCACCATCCTCACCGTCATCGGCTACAACCACCAGACAGCCACCGCCGCCGAGCCCTGCAGCGGCGTCGGCGTCCTCGGCATCGCTTGGGCCTTTGGAGGCATGATTTTTGTCCTCGTCTATTGCACCGCCGGCATATCAGGGGGACACATAAACCCGGCGGTGACGTTCGGGTTGTTTTTGGCGAGGAAGGTGTCGCTGACAAGAGCTGTTGGGTACATGGTGGCTCAGGTGTTGGGGGCCATAAGTGGGGTGGGGCTTGTGAAGGCTTTGCAGAAGAGCTACTACAACAGGTACAAAGGTGGCGTGAACATGCTCGCTGATGGTTACAGCAAAGGAACCGGTTTGGGCGCTGAGATTATTGGCACCTTTATTCTTGTCTACACCGTCTTCTCTGCTACCGATCCCAAGAGAGTAGCAAGAGACTCCCATGTTCCCGTGTTGGCACCACTTCCAATTGGGTTTGCGGTGTTCATGGTTCACTTGGCCACCATCCCTATCACCGGCACTGGCATCAACCCAGCTAGAAGCCTTGGGCCTGCTGTCATATTCAACAACGAGAAGGCTTGGGATGACCAGTGGATCTTCTGGGTTGGACCCTTCATCGGTGCTGCTCTTGCTGCATTCTACCACCAGTCCGTGTTGAGGGCCCAAGCAGCAAAGGCTCTAGGGTCTTTCAGGAGCTCCTCAAACCTGTAA 858 0.5641 MAKDLETEIQSGLPHKDYHDPPPAPFYDPAELRKWSFFRALIAEFVATLLFLYVTILTVIGYNHQTATAAEPCSGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLTRAVGYMVAQVLGAISGVGLVKALQKSYYNRYKGGVNMLADGYSKGTGLGAEIIGTFILVYTVFSATDPKRVARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGPAVIFNNEKAWDDQWIFWVGPFIGAALAAFYHQSVLRAQAAKALGSFRSSSNL* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1509 285 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Gso19g1509 285 CDD MIP 39 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g1509 285 Pfam Major intrinsic protein 31 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g1509 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Gso19g1509 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g1509 285 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g1509 285 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g1509 285 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g1509 285 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g1509 285 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso19g1509 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 282 IPR034294 -
Gso19g1509 285 SUPERFAMILY Aquaporin-like 31 269 IPR023271 -
Gso19g1509 285 PANTHER AQUAPORIN PIP2-4-RELATED 1 282 - -
Gso19g1509 285 TIGRFAM MIP: MIP family channel proteins 43 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1509 Gso-Chr19 43918375 43920475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1509 1 285 Major Intrinsic Protein MIP AT3G53420 77.700 2.78e-163 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1509 K09872 - gmx:100807883 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1509 19 43918375 43920475 Gso3g1524 3 41110253 41112048 GST