Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1508 ATGTGTCAAAGACTTAGCTTAGCTCAGCTCAAATCACAACCTCGGTGTTCTTTCTCTCAATTTCTTCTCATAATTGCCATCTCCAAAACCTTCACGAACCGCACACCCAAATCCAACATCCTACGAATTTTTACACTTCTCTCGAGCCATGAAGAATCCTTTTTCTTTTTGCACTTGTTTCTCAGCATCGATCAAAGAACAAACCAAGCACGAATTATGGATTGCATCTGTAATTACCCAACAGAGGAGCCAGATGAAGATAATAATGATGGCAACTTTCGCTTATTCACGTATAGAGAATTGAATTCTGCCACACGTGGTTTTCACCCATCGGAAAAGATTGGAGAAGGAGGCTTTGGCACTGTCTACAAGGGGCAGCTTCGGGATGGAACTTTGGTGGCAGTGAAAGTGCTTTCAATTGAGCTAGATTCCTTGAGAGGAGAGAGGGAGTTTGTGGCAGAATTGAATACACTAACAAATATCAAACACCACAATCTTGTCAATCTCCGAGGGTGTTGTGTAGAAGGAGCCCACAGATACATAGTCTACGACTACATGGAAAACAATAGCCTTCGTTACACTTTCTTAGGTTCAGAGCAAAAAAGGATGGAATTCAGCTGGGAAACTCGGAGGGATGTATCCATAGGTGTGGCCAGAGGGCTTGCCTTTCTCCATGAGGAACATCAACCCCATATTGTGCATAGAGATATCAAATCCAGCAATGTTCTTCTTGATCCAAATTTTACACCAAAAGTCTCGGATTTTGGCTTGGCCAAGCTACTAAGAGATGAAAAGTCCCATGTCACTACCCATGTTGCAGGCACATTGGGTTATCTTGCACCAGACTATGCTAGTTCTGGACACTTGACACGAAAATCAGATGTTTATAGCTTTGGAGTACTACTTTTGGAAATTGTCAGTGGCCAAAGAGTGGTAGATGCTTATCAAAACGGGGAACGTTTCATAGTTGAGAAGGCTTGGGCAGCATATGAGGCTAATGATCTTCTGAGAATGGTGGATCCAGTGCTGAATAACAACTATCCCGCGGAAGAAGTGAAACGGTTCCTAATGGTGGGGCTGCGTTGCGTGCAAGAAATGGCGAGGCTTAGGCCACGAATGTCAGAGGTTTTGGACATGTTGACCAACAATGTTGACATGGGAGAGTTTAGTGTTTCAAAACCAGGATTAGTCACTGATCTCAGGAGCGCCAGAATAAGGAGCCAAATGAATCCATCAGAAGAATCAAGTGTTACTGCAGCAACCTTTGCAGACTCCTCTGGATGGAGTACCGCCAATCTTGCCCGTTAG 1308 0.4396 MCQRLSLAQLKSQPRCSFSQFLLIIAISKTFTNRTPKSNILRIFTLLSSHEESFFFLHLFLSIDQRTNQARIMDCICNYPTEEPDEDNNDGNFRLFTYRELNSATRGFHPSEKIGEGGFGTVYKGQLRDGTLVAVKVLSIELDSLRGEREFVAELNTLTNIKHHNLVNLRGCCVEGAHRYIVYDYMENNSLRYTFLGSEQKRMEFSWETRRDVSIGVARGLAFLHEEHQPHIVHRDIKSSNVLLDPNFTPKVSDFGLAKLLRDEKSHVTTHVAGTLGYLAPDYASSGHLTRKSDVYSFGVLLLEIVSGQRVVDAYQNGERFIVEKAWAAYEANDLLRMVDPVLNNNYPAEEVKRFLMVGLRCVQEMARLRPRMSEVLDMLTNNVDMGEFSVSKPGLVTDLRSARIRSQMNPSEESSVTAATFADSSGWSTANLAR* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1508 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Gso19g1508 435 Gene3D Transferase(Phosphotransferase) domain 1 186 391 - -
Gso19g1508 435 PANTHER RECEPTOR-LIKE KINASE 82 408 - -
Gso19g1508 435 Pfam Protein kinase domain 109 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1508 435 SMART serkin_6 108 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1508 435 ProSiteProfiles Protein kinase domain profile. 108 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso19g1508 435 CDD STKc_IRAK 114 382 - -
Gso19g1508 435 Gene3D Phosphorylase Kinase; domain 1 79 185 - -
Gso19g1508 435 ProSitePatterns Protein kinases ATP-binding region signature. 114 136 IPR017441 GO:0005524
Gso19g1508 435 SUPERFAMILY Protein kinase-like (PK-like) 89 397 IPR011009 -
Gso19g1508 435 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 82 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1508 Gso-Chr19 43904197 43906451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1508 96 399 Receptor kinase-like Gene Family AT1G56120 50.164 1.99e-95 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso19g1508 Pkinase 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1508 - - gmx:100790388 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1508 19 43904197 43906451 Gso3g1522 3 41093265 41096002 GST
Gso19g1508 19 43904197 43906451 Gso13g1075 13 25219157 25221522 PCT
Gso13g1075 13 25219157 25221522 Gso19g1508 19 43904197 43906451 PCT