Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1507 ATGGGCAACATCTCAAGCAGCGGCGGCGTCGGCGGCGGCAATCCCCGTCGCCGACACAGCGGGGCTTCACGGCGGAGTCACCCTCCGCCACCTCCTCCGGTGACGCCGCAGCCTGAGATCGCCGCGAATCCATTCGTGTACCATGGTGCTGCTTCACCGTACCCGAACCCTCCCCTGCATTACCCTCAGTACCATTACCCCGGTTACTATCCTTCGGTGCCACCTCCCATGCCTCATCATCCTCATCATCACCATCATCAACATCATCATCCACACATGGACCCGGCGTGGATTCAGGGGCGTTACCCTTGTGGGCCCATGATGCCTAACCCTGCACCTTTCGTTGAGCATCAGAAAGCCGTTACCATAAAGAACGATGTCAATATCAGGAAAGAGACCCTTAGGCTCGAACCCGATGAACAAAATTCTGGCCACCTCCTCGTTTCGTTTTCCTTCGATGCCACCGTTTCTGGGAGCATTGCCATATATTTCTTTGCAAAAGAAGGTGAAGGCTGCATCCTCACACCAATGAAGGAAAACCATCTTGCACCGGTGACTGTGCATTTCGAGCAAGGTCTTGGCCAGAAGTTTAGACAAGCAGCTGGAACTGGTATTGATTTTTCAGTGTTTGAGGAGTCTGAGTTATTGAAAGTGGGTGACATGAATGTCTACCCTCTAGCAGTAAAGGCAGATGCATCAGTGAAGGCAGATGCTCCCCCTGGTAATTATGACGAGTCAGATAGATCTCCAACCTCTGGTAACACAAACTCTCAGATTACGCAAGTGGTGTTTGAGAAGGAGAAAGGAGAGTTCCGGGTGAAAGTTGCTAAGCAGATCTTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAACGGAGAGTGACTTGGATGAGAATGACCAAGGCAAAGATTGTGTCATTTGCTGGTCAGAGCCTCGAGATACAATTGTCCATCCCTGCCGGCATATGTGTATGTGTAGTGGATGTGCAAAGGTTTTGAGGTTCCAGACGGATAGATGCCCAATTTGCAGGCAACCAATTGAGAGGCTTTTGGAGATAAAGGTTGGGTCTGAGGAGTGA 1101 0.5059 MGNISSSGGVGGGNPRRRHSGASRRSHPPPPPPVTPQPEIAANPFVYHGAASPYPNPPLHYPQYHYPGYYPSVPPPMPHHPHHHHHQHHHPHMDPAWIQGRYPCGPMMPNPAPFVEHQKAVTIKNDVNIRKETLRLEPDEQNSGHLLVSFSFDATVSGSIAIYFFAKEGEGCILTPMKENHLAPVTVHFEQGLGQKFRQAAGTGIDFSVFEESELLKVGDMNVYPLAVKADASVKADAPPGNYDESDRSPTSGNTNSQITQVVFEKEKGEFRVKVAKQILWVNGMRYELQEIYGIGNSTESDLDENDQGKDCVICWSEPRDTIVHPCRHMCMCSGCAKVLRFQTDRCPICRQPIERLLEIKVGSEE* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1507 366 MobiDBLite consensus disorder prediction 1 40 - -
Gso19g1507 366 MobiDBLite consensus disorder prediction 25 39 - -
Gso19g1507 366 PANTHER MAHOGUNIN 1 365 IPR045194 GO:0061630
Gso19g1507 366 MobiDBLite consensus disorder prediction 236 256 - -
Gso19g1507 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 361 IPR013083 -
Gso19g1507 366 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 311 351 IPR045195 -
Gso19g1507 366 ProSiteProfiles Zinc finger RING-type profile. 312 351 IPR001841 -
Gso19g1507 366 SUPERFAMILY RING/U-box 311 356 - -
Gso19g1507 366 Pfam Zinc finger, C3HC4 type (RING finger) 310 356 - -
Gso19g1507 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1507 Gso-Chr19 43896512 43899962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1507 39 331 C3H Transcription Factor Family AT3G09770 55.556 6.89e-96 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1507 - - gmx:100807343 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1507 19 43896512 43899962 Gso3g1521 3 41084943 41088404 GST
Gso19g1507 19 43896512 43899962 Gso13g1074 13 25200912 25205082 PCT
Gso13g1074 13 25200912 25205082 Gso19g1507 19 43896512 43899962 PCT