Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1505 ATGGCCACTGAAGCACATCACTTTCCCAAGATTAATGACCAAGGCACTTCTAGTTCTAGTAGAGCTTATAACCCAATTCAAAAGAAAAAAGGACAGCAGTTACCGATGCATCGTTCCCGTTCAGTTCCTGTGCTTACCGAAGATGGCAACACATACGTAGGTGCCATGTTTCGTATTGTTCCTACCACACCACGGTTGGCAAGGAGTATTGCCACAACATCTACGAAATCTCCACCTGACGACACCATCGAAAACGAGGATGGGGAAGATATTCCTGAAGAAGAAGCCGTCTGCAGAATTTGTTTGATAGAATTGGGAGAAGGTTCTGATACCCTTAAAATGGAGTGCAGCTGCAAAGGTGAACTTGCACTGGCACACCAAGAATGTGCAGTTAAATGGTTTAGCATTAAAGGCAACAGAACATGCGATGTGTGCAAGCAGGAAGTTCAGAACCTACCCGTCACTCTTCTACGAGTTCTAAATGGCCAGACACTTTACTTGACAAGGAGTAGAAGCCAACAATACAGGGTTTGGCAAAATGTCCCCATTCTTGTGATCATCAACATGCTGGCATACTTTTGTTTTCTTGAGCAGCTACTTGTTTCAAGTATGGGATCTGGTGCCGTTGCCATTTCTCTCCCTTTTTCATGTATACTAGGTCTACTTGCAAGCATGACATCCACAATTATGGTGACGTGTGAACATGTTTGGGTTTATGCAATTGCCCAGTTTGTTATGGTGGTTCTGGCTGGACGTCTTTTCTATTCACTGCTTAATAAGGAAGCCGTTCTATCCATCCTACTTGCTACATTTACTGGGTTTGGAGCTGTGATGTGTGGAGCTTATATTCTTATTGAGTTTTTGAAGTGGAGAAGACGATGGCTTGGTTCCCAAGAGGTGGTGCTGCCTCATTAA 915 0.4393 MATEAHHFPKINDQGTSSSSRAYNPIQKKKGQQLPMHRSRSVPVLTEDGNTYVGAMFRIVPTTPRLARSIATTSTKSPPDDTIENEDGEDIPEEEAVCRICLIELGEGSDTLKMECSCKGELALAHQECAVKWFSIKGNRTCDVCKQEVQNLPVTLLRVLNGQTLYLTRSRSQQYRVWQNVPILVIINMLAYFCFLEQLLVSSMGSGAVAISLPFSCILGLLASMTSTIMVTCEHVWVYAIAQFVMVVLAGRLFYSLLNKEAVLSILLATFTGFGAVMCGAYILIEFLKWRRRWLGSQEVVLPH* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1505 304 Pfam RING-variant domain 98 145 IPR011016 GO:0008270
Gso19g1505 304 SMART ringv_2 97 146 IPR011016 GO:0008270
Gso19g1505 304 MobiDBLite consensus disorder prediction 69 89 - -
Gso19g1505 304 MobiDBLite consensus disorder prediction 10 27 - -
Gso19g1505 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 153 IPR013083 -
Gso19g1505 304 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 19 297 - -
Gso19g1505 304 CDD RING_CH-C4HC3_MARCH 98 146 - -
Gso19g1505 304 MobiDBLite consensus disorder prediction 1 39 - -
Gso19g1505 304 PANTHER OS02G0165000 PROTEIN 19 297 - -
Gso19g1505 304 SUPERFAMILY RING/U-box 94 149 - -
Gso19g1505 304 ProSiteProfiles Zinc finger RING-CH-type profile. 90 152 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1505 Gso-Chr19 43876229 43881593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1505 83 152 C3H Transcription Factor Family AT2G37950 39.437 9.59e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1505 - - gmx:100789854 550.436