Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1500 ATGCAAATGATACCCGGAGACCCCTTTTCACTATCCACTTCCCTCCCAGGGCTTCCCAATAATGAACAAAACACTAACACAAACCCTAACCCTAATACTCCACCGCCCAACAAAAAGAAGAGAAATCTACCCGGAACACCAGATCCAGATGCGGAGGTTATTGCTCTTTCGCCAAAGACTCTCATGGCAACGAACCGTTTCATCTGTGAAATATGCAACAAAGGGTTTCAGAGGGACCAGAACCTTCAGCTCCATAGGAGGGGTCACAACCTTCCATGGAAGCTAAGACAGAGATCAAACAAAGATATTCGGAAGAAGGTATATATCTGTCCAGAAAAAACCTGTGTCCACCACGATGCGGCAAGGGCTCTCGGTGATCTCACCGGAATAAAGAAGCATTATAGCAGAAAACACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGTTCGAAAAAATACGCAGTTCAATCTGATTGGAAAGCTCACACCAAAACCTGCGGCACCAGAGAGTATAAGTGCGACTGTGGCACCCTCTTCTCAAGGAAGGACAGTTTTATTACACACAGGGCATTCTGCGATGCCTTAGCTGAAGAGAGTTCGAGACTCACCTCAGTTGCTTCAACGAGCCTAAATTTTATGAGTGAAGATACAACTATGATGAACACACAAGCTAGTTTGTCGTCAAGTGGATTAATCAATGGCCAGGGAATGCAAAGTGTTTCACATTTTGGTCCACATGGGCTTCGTTTAATGAGCATGGGCACAGACCAACAAAGACCAAACTTGTCACTATGGTTGAACCAAGGAAATCACCACATTAACAACCCACTTGATGTGGCATCATCAAGTTCTTCTGGTTTGCCTGAGGTATTGCACATGGCACAACCTAATAATAATGCCTTAATTGGTTCTTCTACAATGTTCTCCAATTTTGGAATAACGCCTGCTTCTTCCAATTCATCTAATCCAAACTTATCTCTAATGGGGAAAAAGGGAGAAGGTGGAGCTTCAGATTTGGCATCAATGTATTCTGAGAGTCAAAACAAGAATTCAAACTCAGCTACTCCAATGTCAGCCACTGCCCTTTTGCAGAAAGCAGCACAAATGGGCTCCACCAGAAGCACCAATCCTTCAATTTTCAGTGGCAGTTTTGGAGTAATGAGCTCATCCTCCACGCAAAGTACTAGTCTCAATAGCAATTCAAACCAAAGCTCTGACCAACTTAACCACGCCTTTCAGAATTTTAATGCAACAAGCAGCAGTGCAACTCTGTTGGGAAGTTCTACTAACTTTAGCTCGTTGACGCATTCATCAAACGGTTTTGACCAGTTTCTGATGGAAAACAATGTGGAGCCGACCCAGTTGAAGCTCCATCCTGGCTCAAACATAATGGAGCAACATAACTTGACAAGAGATTTTCTTGGCGTGAGTGGAAATGGAGGTGGACATCATGCATTTCTACCCCAAGAGCTGGCAAAGTTTGCTTCCTTAGGCTCATCAATGGGATTGAATCAGTTCACTGCAGGCCATCAATGA 1533 0.4403 MQMIPGDPFSLSTSLPGLPNNEQNTNTNPNPNTPPPNKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKDIRKKVYICPEKTCVHHDAARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESSRLTSVASTSLNFMSEDTTMMNTQASLSSSGLINGQGMQSVSHFGPHGLRLMSMGTDQQRPNLSLWLNQGNHHINNPLDVASSSSSGLPEVLHMAQPNNNALIGSSTMFSNFGITPASSNSSNPNLSLMGKKGEGGASDLASMYSESQNKNSNSATPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMSSSSTQSTSLNSNSNQSSDQLNHAFQNFNATSSSATLLGSSTNFSSLTHSSNGFDQFLMENNVEPTQLKLHPGSNIMEQHNLTRDFLGVSGNGGGHHAFLPQELAKFASLGSSMGLNQFTAGHQ* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1500 510 MobiDBLite consensus disorder prediction 315 337 - -
Gso19g1500 510 SUPERFAMILY beta-beta-alpha zinc fingers 66 163 IPR036236 -
Gso19g1500 510 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Gso19g1500 510 Gene3D Classic Zinc Finger 45 117 - -
Gso19g1500 510 PANTHER ZINC FINGER PROTEIN JACKDAW 7 497 IPR033243 GO:0003700
Gso19g1500 510 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Gso19g1500 510 Gene3D Classic Zinc Finger 118 200 - -
Gso19g1500 510 SMART c2h2final6 108 138 IPR013087 -
Gso19g1500 510 SMART c2h2final6 143 163 IPR013087 -
Gso19g1500 510 SMART c2h2final6 67 89 IPR013087 -
Gso19g1500 510 MobiDBLite consensus disorder prediction 1 28 - -
Gso19g1500 510 MobiDBLite consensus disorder prediction 1 50 - -
Gso19g1500 510 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Gso19g1500 510 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1500 Gso-Chr19 43835259 43838031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1500 1 497 IDZ Gene Family AT5G03150 47.802 1.21e-137 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso19g1500 zf-C2H2_jaz 7.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1500 K25870 - gmx:100789331 934.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1500 19 43835259 43838031 Gso3g1514 3 41034717 41037649 GST
Gso19g1500 19 43835259 43838031 Gso13g1070 13 25159315 25162355 PCT
Gso13g1070 13 25159315 25162355 Gso19g1500 19 43835259 43838031 PCT