Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g1497 ATGGGTCATAGGCACTTACATAACACATCTTCATTGTTCGATGGTGAGCCTGACCAGAACTGGAATCATTTGCATACTGATCAACAATATGTGCACCTTGGTAGGACTAACACTTCAGAGAATAGTTCATTTATTTATCCTGCTGAAAATATGTCCATAGATAGCATATCTTTCCCCTCTCATTGGAATTCTTCCTCAAGGTCAAATGGATATGCATCCTCTAGTCACAACATTGTTGTACCTCCTCACCAGTCAGATGCATCAGGCACTTCTAATGATCATTTTGTGCATTCGTCTAGTGCTGGACCATTCTTTACAGTGTCGGAAAATTATTTACACCAACCTTCTTCCTCCAATTATGACAGACAAACATTTCATGTTGATGCTGGTTTTATTGATCTTACAATGGGAAGTGGACAAGGGCATCACAAGCGTAAGAGCCCTGGAATTCCTTCAGTCTACGAGGGAGGCAGTACTAGTAGATACTTTAATGCTGGGAGTTCAACTGATCTTCCTATATCTTCAGAATTGTGGCAGGAGAAGCCAAATATTGATTCTCAATATATGCCCTGGGATCATTTTACTATGACACCCACATTCAGAGGTACTGGCCTTTCAATTAAGGGTGAGGGTTCTTTGCGGAATGTGAGGAGCCGTTCTACACTTGATTTGGATTCCAATCTGTCTAGGACCCATTTATCAAGTAATCATTCACACAATTCCTACCCTACTGTCCCACCAGTTGACCATTCTAGCATGGCGGATCTTTCTGGTCAGACTTCTGGTACATTAACAAGGGATTGGAGCCAAATGAACATGTCTCCAGCTAATGGAAGGGTGTTATTATCAGATACAAGTTCTTTTGGTCTTGAAACAAGTCACTTCCTTGTTGGAAGTGGTGCTACTGCTAGCAATGCTTCTGTAGATGTTGGGGGCTTCCATCATGAATTTGGTGCAAGCAGAAATCCTACTGCTCCTCAAAGTTTTCATAATACTCATACTCAGACCGCTAGGGGAATTCGAAGCAACTATTCTCAGAGATCCACACCAACTTTTAGGGCTTCTTCAAGCTTGCGCTTGGGACATGTGACATCTGATGATGGATTGCCTATGGTAGCTGAAAGTTACTCTTCTAGACATCCAAGGCCATTGAGCACCATTGGCTGGAGGAATGGTGATAGAAATGGGAGGTCAAGAATTTCTAGTGAAAGATATCGATCATTGACTGAGGAGAGTGGTCTCCATGATCGATTTTCCTCTGAGGGTTTCATGGTTGTTGAGCGTGCATCAGTGTATGGTTCCAGGAATATGCTTGATCAGCACCGAGACATGAGGATGGATGTAGATAACATGAGTTATGAGGAACTACTTGCACTTGGTGAGAGGATTGGCTATGTGAACACAGGAGTCTCTGAGGATTTGCTTTCCAAATGTTTGACGGAAACAATATATTGTTCATCTGAGCAAAGTGAAGACGAAGGAAACTGCGTAATATGTCTGGAAGAGTACAAGAATATGGACGATGTTGGAACACTTCAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGCTATCTATGAAGAAATTATGTCCTATCTGCAAAGTATCTGCTTTGCCTGAGGATACGAAGGATAAATAA 1650 0.42 MGHRHLHNTSSLFDGEPDQNWNHLHTDQQYVHLGRTNTSENSSFIYPAENMSIDSISFPSHWNSSSRSNGYASSSHNIVVPPHQSDASGTSNDHFVHSSSAGPFFTVSENYLHQPSSSNYDRQTFHVDAGFIDLTMGSGQGHHKRKSPGIPSVYEGGSTSRYFNAGSSTDLPISSELWQEKPNIDSQYMPWDHFTMTPTFRGTGLSIKGEGSLRNVRSRSTLDLDSNLSRTHLSSNHSHNSYPTVPPVDHSSMADLSGQTSGTLTRDWSQMNMSPANGRVLLSDTSSFGLETSHFLVGSGATASNASVDVGGFHHEFGASRNPTAPQSFHNTHTQTARGIRSNYSQRSTPTFRASSSLRLGHVTSDDGLPMVAESYSSRHPRPLSTIGWRNGDRNGRSRISSERYRSLTEESGLHDRFSSEGFMVVERASVYGSRNMLDQHRDMRMDVDNMSYEELLALGERIGYVNTGVSEDLLSKCLTETIYCSSEQSEDEGNCVICLEEYKNMDDVGTLQTCGHDYHVSCIKKWLSMKKLCPICKVSALPEDTKDK* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g1497 549 ProSiteProfiles Zinc finger RING-type profile. 496 538 IPR001841 -
Gso19g1497 549 CDD RING-H2_TTC3 495 538 - -
Gso19g1497 549 MobiDBLite consensus disorder prediction 69 94 - -
Gso19g1497 549 SMART ring_2 496 537 IPR001841 -
Gso19g1497 549 SUPERFAMILY RING/U-box 486 541 - -
Gso19g1497 549 Pfam Ring finger domain 495 538 IPR001841 -
Gso19g1497 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 542 IPR013083 -
Gso19g1497 549 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 545 - -
Gso19g1497 549 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 545 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g1497 Gso-Chr19 43794334 43802954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g1497 1 548 C3H Transcription Factor Family AT2G37150 44.784 3.62e-126 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g1497 - - gmx:100803627 1130.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1497 19 43794334 43802954 Gso3g1512 3 40998502 41007347 GST
Gso19g1497 19 43794334 43802954 Gso13g1068 13 25118898 25127595 PCT
Gso13g1068 13 25118898 25127595 Gso19g1497 19 43794334 43802954 PCT